Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03754 and ECD_03755 are separated by 285 nucleotides ECD_03755 and ECD_03756 are separated by 372 nucleotides
ECD_03754: ECD_03754 - sensory histidine kinase in two-component regulatory system with GlnG, at 3,961,988 to 3,963,037
_03754
ECD_03755: ECD_03755 - glutamine synthetase, at 3,963,323 to 3,964,732
_03755
ECD_03756: ECD_03756 - GTP-binding protein, at 3,965,105 to 3,966,928
_03756
Position (kb)
3963
3964
3965 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3962.367 kb on + strand, within ECD_03754 at 3962.418 kb on - strand, within ECD_03754 at 3962.536 kb on + strand, within ECD_03754 at 3962.536 kb on + strand, within ECD_03754 at 3962.537 kb on - strand, within ECD_03754 at 3962.537 kb on - strand, within ECD_03754 at 3962.539 kb on - strand, within ECD_03754 at 3962.539 kb on - strand, within ECD_03754 at 3962.639 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.672 kb on + strand, within ECD_03754 at 3962.673 kb on - strand, within ECD_03754 at 3962.673 kb on - strand, within ECD_03754 at 3962.673 kb on - strand, within ECD_03754 at 3962.743 kb on + strand, within ECD_03754 at 3962.744 kb on - strand, within ECD_03754 at 3962.851 kb on + strand, within ECD_03754 at 3962.851 kb on + strand, within ECD_03754 at 3962.855 kb on + strand, within ECD_03754 at 3962.866 kb on - strand, within ECD_03754 at 3962.866 kb on - strand, within ECD_03754 at 3963.038 kb on - strand at 3963.093 kb on + strand at 3963.150 kb on + strand at 3963.150 kb on + strand at 3963.156 kb on + strand at 3963.202 kb on - strand at 3963.324 kb on + strand at 3963.334 kb on - strand at 3963.406 kb on - strand at 3963.406 kb on - strand at 3963.587 kb on - strand, within ECD_03755 at 3963.698 kb on - strand, within ECD_03755 at 3963.730 kb on - strand, within ECD_03755 at 3963.730 kb on - strand, within ECD_03755 at 3963.775 kb on - strand, within ECD_03755 at 3963.775 kb on - strand, within ECD_03755 at 3963.841 kb on - strand, within ECD_03755 at 3963.841 kb on - strand, within ECD_03755 at 3963.844 kb on - strand, within ECD_03755 at 3963.871 kb on - strand, within ECD_03755 at 3963.996 kb on - strand, within ECD_03755 at 3964.012 kb on - strand, within ECD_03755 at 3964.012 kb on - strand, within ECD_03755 at 3964.012 kb on - strand, within ECD_03755 at 3964.012 kb on - strand, within ECD_03755 at 3964.012 kb on - strand, within ECD_03755 at 3964.012 kb on - strand, within ECD_03755 at 3964.092 kb on - strand, within ECD_03755 at 3964.160 kb on - strand, within ECD_03755 at 3964.240 kb on - strand, within ECD_03755 at 3964.359 kb on - strand, within ECD_03755 at 3964.390 kb on - strand, within ECD_03755 at 3964.658 kb on - strand at 3964.658 kb on - strand at 3964.715 kb on + strand at 3964.732 kb on + strand at 3964.733 kb on - strand at 3964.733 kb on - strand at 3964.738 kb on - strand at 3964.738 kb on - strand at 3964.786 kb on - strand at 3964.786 kb on - strand at 3964.913 kb on + strand at 3964.914 kb on - strand at 3964.914 kb on - strand at 3964.914 kb on - strand at 3964.976 kb on + strand at 3965.014 kb on - strand at 3965.014 kb on - strand at 3965.014 kb on - strand at 3965.080 kb on + strand at 3965.125 kb on + strand at 3965.146 kb on - strand at 3965.146 kb on - strand at 3965.146 kb on - strand at 3965.156 kb on - strand at 3965.156 kb on - strand at 3965.170 kb on - strand at 3965.311 kb on + strand, within ECD_03756 at 3965.367 kb on + strand, within ECD_03756 at 3965.367 kb on + strand, within ECD_03756 at 3965.368 kb on - strand, within ECD_03756 at 3965.368 kb on - strand, within ECD_03756 at 3965.379 kb on + strand, within ECD_03756 at 3965.379 kb on + strand, within ECD_03756 at 3965.380 kb on - strand, within ECD_03756 at 3965.380 kb on - strand, within ECD_03756 at 3965.482 kb on + strand, within ECD_03756 at 3965.638 kb on + strand, within ECD_03756 at 3965.639 kb on - strand, within ECD_03756
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 3,962,367 + ECD_03754 0.36 -2.0 3,962,418 - ECD_03754 0.41 +0.3 3,962,536 + ECD_03754 0.52 -0.8 3,962,536 + ECD_03754 0.52 -0.6 3,962,537 - ECD_03754 0.52 +0.4 3,962,537 - ECD_03754 0.52 +1.1 3,962,539 - ECD_03754 0.52 -1.5 3,962,539 - ECD_03754 0.52 +0.2 3,962,639 + ECD_03754 0.62 +1.0 3,962,672 + ECD_03754 0.65 +0.0 3,962,672 + ECD_03754 0.65 -0.4 3,962,672 + ECD_03754 0.65 +0.9 3,962,672 + ECD_03754 0.65 -0.4 3,962,672 + ECD_03754 0.65 +0.4 3,962,673 - ECD_03754 0.65 -2.0 3,962,673 - ECD_03754 0.65 -1.7 3,962,673 - ECD_03754 0.65 -0.9 3,962,743 + ECD_03754 0.72 -0.0 3,962,744 - ECD_03754 0.72 -1.1 3,962,851 + ECD_03754 0.82 +0.7 3,962,851 + ECD_03754 0.82 -0.5 3,962,855 + ECD_03754 0.83 +0.2 3,962,866 - ECD_03754 0.84 +0.5 3,962,866 - ECD_03754 0.84 -0.8 3,963,038 - -0.5 3,963,093 + -1.2 3,963,150 + -0.5 3,963,150 + -0.3 3,963,156 + -0.2 3,963,202 - +0.5 3,963,324 + -0.8 3,963,334 - +0.0 3,963,406 - -0.8 3,963,406 - +0.3 3,963,587 - ECD_03755 0.19 -0.3 3,963,698 - ECD_03755 0.27 -0.5 3,963,730 - ECD_03755 0.29 -0.5 3,963,730 - ECD_03755 0.29 +0.9 3,963,775 - ECD_03755 0.32 +1.4 3,963,775 - ECD_03755 0.32 +2.2 3,963,841 - ECD_03755 0.37 -1.1 3,963,841 - ECD_03755 0.37 +0.2 3,963,844 - ECD_03755 0.37 +0.1 3,963,871 - ECD_03755 0.39 -0.1 3,963,996 - ECD_03755 0.48 +0.4 3,964,012 - ECD_03755 0.49 -0.5 3,964,012 - ECD_03755 0.49 -1.1 3,964,012 - ECD_03755 0.49 +0.5 3,964,012 - ECD_03755 0.49 +0.2 3,964,012 - ECD_03755 0.49 -1.2 3,964,012 - ECD_03755 0.49 -1.2 3,964,092 - ECD_03755 0.55 +0.8 3,964,160 - ECD_03755 0.59 +0.0 3,964,240 - ECD_03755 0.65 -0.1 3,964,359 - ECD_03755 0.73 +0.0 3,964,390 - ECD_03755 0.76 -0.9 3,964,658 - -0.6 3,964,658 - -0.7 3,964,715 + -1.5 3,964,732 + +0.0 3,964,733 - +0.1 3,964,733 - -1.4 3,964,738 - -0.6 3,964,738 - -0.5 3,964,786 - +0.2 3,964,786 - +0.5 3,964,913 + -0.3 3,964,914 - -0.1 3,964,914 - +1.0 3,964,914 - -0.1 3,964,976 + +0.9 3,965,014 - +0.8 3,965,014 - +0.0 3,965,014 - +0.7 3,965,080 + -1.0 3,965,125 + -0.1 3,965,146 - -1.5 3,965,146 - -0.9 3,965,146 - -1.4 3,965,156 - -0.3 3,965,156 - -0.1 3,965,170 - -1.8 3,965,311 + ECD_03756 0.11 -0.2 3,965,367 + ECD_03756 0.14 -0.5 3,965,367 + ECD_03756 0.14 -1.6 3,965,368 - ECD_03756 0.14 +0.5 3,965,368 - ECD_03756 0.14 -2.5 3,965,379 + ECD_03756 0.15 +0.3 3,965,379 + ECD_03756 0.15 -1.6 3,965,380 - ECD_03756 0.15 -0.4 3,965,380 - ECD_03756 0.15 -1.1 3,965,482 + ECD_03756 0.21 -0.7 3,965,638 + ECD_03756 0.29 -0.8 3,965,639 - ECD_03756 0.29 -3.1
Or see this region's nucleotide sequence