Strain Fitness in Escherichia coli BL21 around ECD_03394

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03392 and ECD_03393 are separated by 10 nucleotidesECD_03393 and ECD_03394 are separated by 9 nucleotidesECD_03394 and ECD_03395 are separated by 307 nucleotides ECD_03392: ECD_03392 - dipeptide/heme ABC transporter ATPase, at 3,565,019 to 3,566,002 _03392 ECD_03393: ECD_03393 - dipeptide/heme ABC transporter permease, at 3,566,013 to 3,566,915 _03393 ECD_03394: ECD_03394 - dipeptide/heme ABC transporter permease, at 3,566,925 to 3,567,944 _03394 ECD_03395: ECD_03395 - dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor, at 3,568,252 to 3,569,859 _03395 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -2 -1 0 1 2at 3565.982 kb on - strandat 3565.985 kb on + strandat 3565.986 kb on - strandat 3565.991 kb on + strandat 3565.992 kb on - strandat 3565.994 kb on + strandat 3566.014 kb on + strandat 3566.014 kb on + strandat 3566.014 kb on + strandat 3566.015 kb on - strandat 3566.066 kb on + strandat 3566.066 kb on + strandat 3566.291 kb on + strand, within ECD_03393at 3566.291 kb on + strand, within ECD_03393at 3566.389 kb on + strand, within ECD_03393at 3566.390 kb on - strand, within ECD_03393at 3566.514 kb on - strand, within ECD_03393at 3566.543 kb on - strand, within ECD_03393at 3566.573 kb on + strand, within ECD_03393at 3566.574 kb on - strand, within ECD_03393at 3566.592 kb on + strand, within ECD_03393at 3566.592 kb on + strand, within ECD_03393at 3566.592 kb on + strand, within ECD_03393at 3566.629 kb on + strand, within ECD_03393at 3566.629 kb on + strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.630 kb on - strand, within ECD_03393at 3566.659 kb on - strand, within ECD_03393at 3566.659 kb on - strand, within ECD_03393at 3566.752 kb on + strand, within ECD_03393at 3566.752 kb on + strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.753 kb on - strand, within ECD_03393at 3566.803 kb on + strand, within ECD_03393at 3566.842 kb on + strandat 3566.843 kb on - strandat 3566.859 kb on + strandat 3566.927 kb on - strandat 3566.933 kb on + strandat 3566.963 kb on - strandat 3566.993 kb on + strandat 3567.015 kb on + strandat 3567.238 kb on + strand, within ECD_03394at 3567.278 kb on + strand, within ECD_03394at 3567.278 kb on + strand, within ECD_03394at 3567.305 kb on + strand, within ECD_03394at 3567.306 kb on - strand, within ECD_03394at 3567.332 kb on + strand, within ECD_03394at 3567.393 kb on - strand, within ECD_03394at 3567.712 kb on - strand, within ECD_03394at 3567.712 kb on - strand, within ECD_03394at 3567.712 kb on - strand, within ECD_03394at 3567.726 kb on - strand, within ECD_03394at 3567.740 kb on - strand, within ECD_03394at 3567.749 kb on - strand, within ECD_03394at 3567.749 kb on - strand, within ECD_03394at 3567.749 kb on - strand, within ECD_03394at 3567.749 kb on - strand, within ECD_03394at 3567.768 kb on - strand, within ECD_03394at 3567.768 kb on - strand, within ECD_03394at 3567.772 kb on - strand, within ECD_03394at 3567.772 kb on - strand, within ECD_03394at 3567.887 kb on + strandat 3567.888 kb on - strandat 3567.933 kb on - strandat 3567.945 kb on - strandat 3567.958 kb on + strandat 3567.959 kb on - strandat 3567.961 kb on - strandat 3567.991 kb on + strandat 3567.991 kb on + strandat 3568.018 kb on + strandat 3568.037 kb on + strandat 3568.037 kb on + strandat 3568.037 kb on + strandat 3568.038 kb on - strandat 3568.038 kb on - strandat 3568.038 kb on - strandat 3568.086 kb on - strandat 3568.086 kb on - strandat 3568.250 kb on - strandat 3568.304 kb on + strandat 3568.312 kb on - strandat 3568.320 kb on + strandat 3568.321 kb on - strandat 3568.324 kb on + strandat 3568.400 kb on + strandat 3568.416 kb on + strand, within ECD_03395at 3568.416 kb on + strand, within ECD_03395at 3568.416 kb on + strand, within ECD_03395at 3568.470 kb on - strand, within ECD_03395at 3568.470 kb on - strand, within ECD_03395at 3568.485 kb on - strand, within ECD_03395at 3568.611 kb on - strand, within ECD_03395at 3568.611 kb on - strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.625 kb on + strand, within ECD_03395at 3568.706 kb on + strand, within ECD_03395at 3568.707 kb on - strand, within ECD_03395at 3568.718 kb on - strand, within ECD_03395at 3568.799 kb on + strand, within ECD_03395at 3568.799 kb on + strand, within ECD_03395at 3568.800 kb on - strand, within ECD_03395at 3568.805 kb on + strand, within ECD_03395at 3568.806 kb on - strand, within ECD_03395at 3568.806 kb on - strand, within ECD_03395at 3568.806 kb on - strand, within ECD_03395at 3568.824 kb on + strand, within ECD_03395at 3568.827 kb on - strand, within ECD_03395at 3568.881 kb on - strand, within ECD_03395

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,565,982 - +0.6
3,565,985 + +1.4
3,565,986 - +0.4
3,565,991 + -0.3
3,565,992 - +0.0
3,565,994 + +0.1
3,566,014 + +0.5
3,566,014 + -0.1
3,566,014 + -0.6
3,566,015 - +0.2
3,566,066 + -2.0
3,566,066 + -0.3
3,566,291 + ECD_03393 0.31 -1.0
3,566,291 + ECD_03393 0.31 -0.2
3,566,389 + ECD_03393 0.42 +0.3
3,566,390 - ECD_03393 0.42 +0.1
3,566,514 - ECD_03393 0.55 +0.4
3,566,543 - ECD_03393 0.59 -0.2
3,566,573 + ECD_03393 0.62 -1.0
3,566,574 - ECD_03393 0.62 -0.4
3,566,592 + ECD_03393 0.64 -0.5
3,566,592 + ECD_03393 0.64 +0.7
3,566,592 + ECD_03393 0.64 +2.0
3,566,629 + ECD_03393 0.68 +0.0
3,566,629 + ECD_03393 0.68 +0.4
3,566,630 - ECD_03393 0.68 +0.7
3,566,630 - ECD_03393 0.68 -0.2
3,566,630 - ECD_03393 0.68 -0.1
3,566,630 - ECD_03393 0.68 +1.2
3,566,659 - ECD_03393 0.72 +0.4
3,566,659 - ECD_03393 0.72 -0.6
3,566,752 + ECD_03393 0.82 +0.0
3,566,752 + ECD_03393 0.82 +0.1
3,566,753 - ECD_03393 0.82 -0.1
3,566,753 - ECD_03393 0.82 -0.4
3,566,753 - ECD_03393 0.82 +0.0
3,566,753 - ECD_03393 0.82 -0.8
3,566,753 - ECD_03393 0.82 -0.7
3,566,753 - ECD_03393 0.82 +0.2
3,566,753 - ECD_03393 0.82 -0.6
3,566,753 - ECD_03393 0.82 +0.1
3,566,803 + ECD_03393 0.87 -0.6
3,566,842 + +0.7
3,566,843 - -0.2
3,566,859 + +2.6
3,566,927 - +0.8
3,566,933 + +0.2
3,566,963 - +0.4
3,566,993 + -0.5
3,567,015 + +0.7
3,567,238 + ECD_03394 0.31 +0.2
3,567,278 + ECD_03394 0.35 +0.3
3,567,278 + ECD_03394 0.35 +0.8
3,567,305 + ECD_03394 0.37 +0.7
3,567,306 - ECD_03394 0.37 -0.3
3,567,332 + ECD_03394 0.40 -1.3
3,567,393 - ECD_03394 0.46 +0.2
3,567,712 - ECD_03394 0.77 -1.7
3,567,712 - ECD_03394 0.77 -0.1
3,567,712 - ECD_03394 0.77 -0.0
3,567,726 - ECD_03394 0.79 -0.4
3,567,740 - ECD_03394 0.80 +0.4
3,567,749 - ECD_03394 0.81 +0.3
3,567,749 - ECD_03394 0.81 -0.7
3,567,749 - ECD_03394 0.81 +0.7
3,567,749 - ECD_03394 0.81 +0.0
3,567,768 - ECD_03394 0.83 +0.7
3,567,768 - ECD_03394 0.83 +0.1
3,567,772 - ECD_03394 0.83 +0.6
3,567,772 - ECD_03394 0.83 +0.9
3,567,887 + +0.2
3,567,888 - +1.7
3,567,933 - -0.2
3,567,945 - +0.3
3,567,958 + -0.7
3,567,959 - +0.2
3,567,961 - -1.4
3,567,991 + -1.7
3,567,991 + -0.6
3,568,018 + +0.7
3,568,037 + +0.8
3,568,037 + +0.1
3,568,037 + -0.0
3,568,038 - +0.6
3,568,038 - -0.4
3,568,038 - +1.9
3,568,086 - +0.2
3,568,086 - -0.7
3,568,250 - +0.7
3,568,304 + +0.1
3,568,312 - -0.1
3,568,320 + +0.7
3,568,321 - +0.4
3,568,324 + -0.0
3,568,400 + +0.3
3,568,416 + ECD_03395 0.10 -1.4
3,568,416 + ECD_03395 0.10 +0.3
3,568,416 + ECD_03395 0.10 -0.3
3,568,470 - ECD_03395 0.14 +0.4
3,568,470 - ECD_03395 0.14 +0.4
3,568,485 - ECD_03395 0.14 +0.1
3,568,611 - ECD_03395 0.22 -0.4
3,568,611 - ECD_03395 0.22 -0.3
3,568,625 + ECD_03395 0.23 +0.2
3,568,625 + ECD_03395 0.23 +0.8
3,568,625 + ECD_03395 0.23 +0.2
3,568,625 + ECD_03395 0.23 +1.1
3,568,625 + ECD_03395 0.23 +0.2
3,568,625 + ECD_03395 0.23 -0.4
3,568,625 + ECD_03395 0.23 -1.9
3,568,625 + ECD_03395 0.23 -0.6
3,568,706 + ECD_03395 0.28 +0.1
3,568,707 - ECD_03395 0.28 +0.8
3,568,718 - ECD_03395 0.29 -0.6
3,568,799 + ECD_03395 0.34 +0.9
3,568,799 + ECD_03395 0.34 +0.5
3,568,800 - ECD_03395 0.34 -0.6
3,568,805 + ECD_03395 0.34 +0.1
3,568,806 - ECD_03395 0.34 +0.1
3,568,806 - ECD_03395 0.34 -0.1
3,568,806 - ECD_03395 0.34 -0.4
3,568,824 + ECD_03395 0.36 +1.0
3,568,827 - ECD_03395 0.36 -0.1
3,568,881 - ECD_03395 0.39 +0.4

Or see this region's nucleotide sequence