Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03392 and ECD_03393 are separated by 10 nucleotides ECD_03393 and ECD_03394 are separated by 9 nucleotides ECD_03394 and ECD_03395 are separated by 307 nucleotides
ECD_03392: ECD_03392 - dipeptide/heme ABC transporter ATPase, at 3,565,019 to 3,566,002
_03392
ECD_03393: ECD_03393 - dipeptide/heme ABC transporter permease, at 3,566,013 to 3,566,915
_03393
ECD_03394: ECD_03394 - dipeptide/heme ABC transporter permease, at 3,566,925 to 3,567,944
_03394
ECD_03395: ECD_03395 - dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor, at 3,568,252 to 3,569,859
_03395
Position (kb)
3566
3567
3568 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3565.982 kb on - strand at 3565.985 kb on + strand at 3565.986 kb on - strand at 3565.991 kb on + strand at 3565.992 kb on - strand at 3565.994 kb on + strand at 3566.014 kb on + strand at 3566.014 kb on + strand at 3566.014 kb on + strand at 3566.015 kb on - strand at 3566.066 kb on + strand at 3566.066 kb on + strand at 3566.291 kb on + strand, within ECD_03393 at 3566.291 kb on + strand, within ECD_03393 at 3566.389 kb on + strand, within ECD_03393 at 3566.390 kb on - strand, within ECD_03393 at 3566.514 kb on - strand, within ECD_03393 at 3566.543 kb on - strand, within ECD_03393 at 3566.573 kb on + strand, within ECD_03393 at 3566.574 kb on - strand, within ECD_03393 at 3566.592 kb on + strand, within ECD_03393 at 3566.592 kb on + strand, within ECD_03393 at 3566.592 kb on + strand, within ECD_03393 at 3566.629 kb on + strand, within ECD_03393 at 3566.629 kb on + strand, within ECD_03393 at 3566.630 kb on - strand, within ECD_03393 at 3566.630 kb on - strand, within ECD_03393 at 3566.630 kb on - strand, within ECD_03393 at 3566.630 kb on - strand, within ECD_03393 at 3566.659 kb on - strand, within ECD_03393 at 3566.659 kb on - strand, within ECD_03393 at 3566.752 kb on + strand, within ECD_03393 at 3566.752 kb on + strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.753 kb on - strand, within ECD_03393 at 3566.803 kb on + strand, within ECD_03393 at 3566.842 kb on + strand at 3566.843 kb on - strand at 3566.859 kb on + strand at 3566.927 kb on - strand at 3566.933 kb on + strand at 3566.963 kb on - strand at 3566.993 kb on + strand at 3567.015 kb on + strand at 3567.238 kb on + strand, within ECD_03394 at 3567.278 kb on + strand, within ECD_03394 at 3567.278 kb on + strand, within ECD_03394 at 3567.305 kb on + strand, within ECD_03394 at 3567.306 kb on - strand, within ECD_03394 at 3567.332 kb on + strand, within ECD_03394 at 3567.393 kb on - strand, within ECD_03394 at 3567.712 kb on - strand, within ECD_03394 at 3567.712 kb on - strand, within ECD_03394 at 3567.712 kb on - strand, within ECD_03394 at 3567.726 kb on - strand, within ECD_03394 at 3567.740 kb on - strand, within ECD_03394 at 3567.749 kb on - strand, within ECD_03394 at 3567.749 kb on - strand, within ECD_03394 at 3567.749 kb on - strand, within ECD_03394 at 3567.749 kb on - strand, within ECD_03394 at 3567.768 kb on - strand, within ECD_03394 at 3567.768 kb on - strand, within ECD_03394 at 3567.772 kb on - strand, within ECD_03394 at 3567.772 kb on - strand, within ECD_03394 at 3567.887 kb on + strand at 3567.888 kb on - strand at 3567.933 kb on - strand at 3567.945 kb on - strand at 3567.958 kb on + strand at 3567.959 kb on - strand at 3567.961 kb on - strand at 3567.991 kb on + strand at 3567.991 kb on + strand at 3568.018 kb on + strand at 3568.037 kb on + strand at 3568.037 kb on + strand at 3568.037 kb on + strand at 3568.038 kb on - strand at 3568.038 kb on - strand at 3568.038 kb on - strand at 3568.086 kb on - strand at 3568.086 kb on - strand at 3568.250 kb on - strand at 3568.304 kb on + strand at 3568.312 kb on - strand at 3568.320 kb on + strand at 3568.321 kb on - strand at 3568.324 kb on + strand at 3568.400 kb on + strand at 3568.416 kb on + strand, within ECD_03395 at 3568.416 kb on + strand, within ECD_03395 at 3568.416 kb on + strand, within ECD_03395 at 3568.470 kb on - strand, within ECD_03395 at 3568.470 kb on - strand, within ECD_03395 at 3568.485 kb on - strand, within ECD_03395 at 3568.611 kb on - strand, within ECD_03395 at 3568.611 kb on - strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.625 kb on + strand, within ECD_03395 at 3568.706 kb on + strand, within ECD_03395 at 3568.707 kb on - strand, within ECD_03395 at 3568.718 kb on - strand, within ECD_03395 at 3568.799 kb on + strand, within ECD_03395 at 3568.799 kb on + strand, within ECD_03395 at 3568.800 kb on - strand, within ECD_03395 at 3568.805 kb on + strand, within ECD_03395 at 3568.806 kb on - strand, within ECD_03395 at 3568.806 kb on - strand, within ECD_03395 at 3568.806 kb on - strand, within ECD_03395 at 3568.824 kb on + strand, within ECD_03395 at 3568.827 kb on - strand, within ECD_03395 at 3568.881 kb on - strand, within ECD_03395
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 3,565,982 - +0.6 3,565,985 + +1.4 3,565,986 - +0.4 3,565,991 + -0.3 3,565,992 - +0.0 3,565,994 + +0.1 3,566,014 + +0.5 3,566,014 + -0.1 3,566,014 + -0.6 3,566,015 - +0.2 3,566,066 + -2.0 3,566,066 + -0.3 3,566,291 + ECD_03393 0.31 -1.0 3,566,291 + ECD_03393 0.31 -0.2 3,566,389 + ECD_03393 0.42 +0.3 3,566,390 - ECD_03393 0.42 +0.1 3,566,514 - ECD_03393 0.55 +0.4 3,566,543 - ECD_03393 0.59 -0.2 3,566,573 + ECD_03393 0.62 -1.0 3,566,574 - ECD_03393 0.62 -0.4 3,566,592 + ECD_03393 0.64 -0.5 3,566,592 + ECD_03393 0.64 +0.7 3,566,592 + ECD_03393 0.64 +2.0 3,566,629 + ECD_03393 0.68 +0.0 3,566,629 + ECD_03393 0.68 +0.4 3,566,630 - ECD_03393 0.68 +0.7 3,566,630 - ECD_03393 0.68 -0.2 3,566,630 - ECD_03393 0.68 -0.1 3,566,630 - ECD_03393 0.68 +1.2 3,566,659 - ECD_03393 0.72 +0.4 3,566,659 - ECD_03393 0.72 -0.6 3,566,752 + ECD_03393 0.82 +0.0 3,566,752 + ECD_03393 0.82 +0.1 3,566,753 - ECD_03393 0.82 -0.1 3,566,753 - ECD_03393 0.82 -0.4 3,566,753 - ECD_03393 0.82 +0.0 3,566,753 - ECD_03393 0.82 -0.8 3,566,753 - ECD_03393 0.82 -0.7 3,566,753 - ECD_03393 0.82 +0.2 3,566,753 - ECD_03393 0.82 -0.6 3,566,753 - ECD_03393 0.82 +0.1 3,566,803 + ECD_03393 0.87 -0.6 3,566,842 + +0.7 3,566,843 - -0.2 3,566,859 + +2.6 3,566,927 - +0.8 3,566,933 + +0.2 3,566,963 - +0.4 3,566,993 + -0.5 3,567,015 + +0.7 3,567,238 + ECD_03394 0.31 +0.2 3,567,278 + ECD_03394 0.35 +0.3 3,567,278 + ECD_03394 0.35 +0.8 3,567,305 + ECD_03394 0.37 +0.7 3,567,306 - ECD_03394 0.37 -0.3 3,567,332 + ECD_03394 0.40 -1.3 3,567,393 - ECD_03394 0.46 +0.2 3,567,712 - ECD_03394 0.77 -1.7 3,567,712 - ECD_03394 0.77 -0.1 3,567,712 - ECD_03394 0.77 -0.0 3,567,726 - ECD_03394 0.79 -0.4 3,567,740 - ECD_03394 0.80 +0.4 3,567,749 - ECD_03394 0.81 +0.3 3,567,749 - ECD_03394 0.81 -0.7 3,567,749 - ECD_03394 0.81 +0.7 3,567,749 - ECD_03394 0.81 +0.0 3,567,768 - ECD_03394 0.83 +0.7 3,567,768 - ECD_03394 0.83 +0.1 3,567,772 - ECD_03394 0.83 +0.6 3,567,772 - ECD_03394 0.83 +0.9 3,567,887 + +0.2 3,567,888 - +1.7 3,567,933 - -0.2 3,567,945 - +0.3 3,567,958 + -0.7 3,567,959 - +0.2 3,567,961 - -1.4 3,567,991 + -1.7 3,567,991 + -0.6 3,568,018 + +0.7 3,568,037 + +0.8 3,568,037 + +0.1 3,568,037 + -0.0 3,568,038 - +0.6 3,568,038 - -0.4 3,568,038 - +1.9 3,568,086 - +0.2 3,568,086 - -0.7 3,568,250 - +0.7 3,568,304 + +0.1 3,568,312 - -0.1 3,568,320 + +0.7 3,568,321 - +0.4 3,568,324 + -0.0 3,568,400 + +0.3 3,568,416 + ECD_03395 0.10 -1.4 3,568,416 + ECD_03395 0.10 +0.3 3,568,416 + ECD_03395 0.10 -0.3 3,568,470 - ECD_03395 0.14 +0.4 3,568,470 - ECD_03395 0.14 +0.4 3,568,485 - ECD_03395 0.14 +0.1 3,568,611 - ECD_03395 0.22 -0.4 3,568,611 - ECD_03395 0.22 -0.3 3,568,625 + ECD_03395 0.23 +0.2 3,568,625 + ECD_03395 0.23 +0.8 3,568,625 + ECD_03395 0.23 +0.2 3,568,625 + ECD_03395 0.23 +1.1 3,568,625 + ECD_03395 0.23 +0.2 3,568,625 + ECD_03395 0.23 -0.4 3,568,625 + ECD_03395 0.23 -1.9 3,568,625 + ECD_03395 0.23 -0.6 3,568,706 + ECD_03395 0.28 +0.1 3,568,707 - ECD_03395 0.28 +0.8 3,568,718 - ECD_03395 0.29 -0.6 3,568,799 + ECD_03395 0.34 +0.9 3,568,799 + ECD_03395 0.34 +0.5 3,568,800 - ECD_03395 0.34 -0.6 3,568,805 + ECD_03395 0.34 +0.1 3,568,806 - ECD_03395 0.34 +0.1 3,568,806 - ECD_03395 0.34 -0.1 3,568,806 - ECD_03395 0.34 -0.4 3,568,824 + ECD_03395 0.36 +1.0 3,568,827 - ECD_03395 0.36 -0.1 3,568,881 - ECD_03395 0.39 +0.4
Or see this region's nucleotide sequence