Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03243 and ECD_03244 overlap by 89 nucleotides ECD_03244 and ECD_03245 overlap by 11 nucleotides ECD_03245 and ECD_03246 overlap by 17 nucleotides ECD_03246 and ECD_03247 overlap by 1 nucleotides
ECD_03243: ECD_03243 - DNA catabolic putative fimbrial transporter, at 3,379,843 to 3,381,081
_03243
ECD_03244: ECD_03244 - DNA catabolic protein, at 3,380,993 to 3,381,397
_03244
ECD_03245: ECD_03245 - DNA catabolic protein, at 3,381,387 to 3,381,827
_03245
ECD_03246: ECD_03246 - DNA catabolic putative fimbrial assembly protein, at 3,381,811 to 3,382,350
_03246
ECD_03247: ECD_03247 - DNA catabolic putative pilus assembly protein, at 3,382,350 to 3,383,129
_03247
Position (kb)
3381
3382 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3380.523 kb on + strand, within ECD_03243 at 3380.523 kb on + strand, within ECD_03243 at 3380.591 kb on - strand, within ECD_03243 at 3380.646 kb on + strand, within ECD_03243 at 3380.646 kb on + strand, within ECD_03243 at 3380.647 kb on - strand, within ECD_03243 at 3380.665 kb on + strand, within ECD_03243 at 3380.666 kb on - strand, within ECD_03243 at 3380.666 kb on - strand, within ECD_03243 at 3380.666 kb on - strand, within ECD_03243 at 3380.717 kb on - strand, within ECD_03243 at 3380.717 kb on - strand, within ECD_03243 at 3380.787 kb on + strand, within ECD_03243 at 3380.869 kb on + strand, within ECD_03243 at 3380.896 kb on + strand, within ECD_03243 at 3380.902 kb on + strand, within ECD_03243 at 3380.902 kb on + strand, within ECD_03243 at 3380.903 kb on - strand, within ECD_03243 at 3380.903 kb on - strand, within ECD_03243 at 3381.034 kb on + strand at 3381.058 kb on + strand at 3381.059 kb on - strand at 3381.059 kb on - strand at 3381.085 kb on + strand, within ECD_03244 at 3381.147 kb on - strand, within ECD_03244 at 3381.168 kb on - strand, within ECD_03244 at 3381.168 kb on - strand, within ECD_03244 at 3381.237 kb on - strand, within ECD_03244 at 3381.311 kb on + strand, within ECD_03244 at 3381.311 kb on + strand, within ECD_03244 at 3381.312 kb on - strand, within ECD_03244 at 3381.329 kb on - strand, within ECD_03244 at 3381.344 kb on - strand, within ECD_03244 at 3381.367 kb on + strand at 3381.367 kb on + strand at 3381.368 kb on - strand at 3381.414 kb on + strand at 3381.414 kb on + strand at 3381.583 kb on - strand, within ECD_03245 at 3381.653 kb on - strand, within ECD_03245 at 3381.696 kb on + strand, within ECD_03245 at 3381.729 kb on + strand, within ECD_03245 at 3381.743 kb on + strand, within ECD_03245 at 3381.747 kb on + strand, within ECD_03245 at 3381.747 kb on + strand, within ECD_03245 at 3381.844 kb on + strand at 3381.940 kb on + strand, within ECD_03246 at 3381.949 kb on + strand, within ECD_03246 at 3382.117 kb on + strand, within ECD_03246 at 3382.156 kb on + strand, within ECD_03246 at 3382.156 kb on + strand, within ECD_03246 at 3382.156 kb on + strand, within ECD_03246 at 3382.157 kb on - strand, within ECD_03246 at 3382.202 kb on - strand, within ECD_03246 at 3382.202 kb on - strand, within ECD_03246 at 3382.234 kb on + strand, within ECD_03246 at 3382.235 kb on - strand, within ECD_03246 at 3382.237 kb on + strand, within ECD_03246 at 3382.355 kb on - strand at 3382.467 kb on + strand, within ECD_03247 at 3382.467 kb on + strand, within ECD_03247 at 3382.618 kb on - strand, within ECD_03247 at 3382.697 kb on + strand, within ECD_03247 at 3382.698 kb on - strand, within ECD_03247 at 3382.739 kb on + strand, within ECD_03247 at 3382.740 kb on - strand, within ECD_03247 at 3382.741 kb on + strand, within ECD_03247 at 3382.741 kb on + strand, within ECD_03247 at 3382.742 kb on - strand, within ECD_03247 at 3382.742 kb on - strand, within ECD_03247 at 3382.769 kb on - strand, within ECD_03247
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 3,380,523 + ECD_03243 0.55 -0.8 3,380,523 + ECD_03243 0.55 -0.1 3,380,591 - ECD_03243 0.60 -0.6 3,380,646 + ECD_03243 0.65 +0.8 3,380,646 + ECD_03243 0.65 +0.5 3,380,647 - ECD_03243 0.65 -2.1 3,380,665 + ECD_03243 0.66 -0.0 3,380,666 - ECD_03243 0.66 +0.5 3,380,666 - ECD_03243 0.66 +0.7 3,380,666 - ECD_03243 0.66 -0.2 3,380,717 - ECD_03243 0.71 -0.3 3,380,717 - ECD_03243 0.71 -0.1 3,380,787 + ECD_03243 0.76 +3.1 3,380,869 + ECD_03243 0.83 -0.4 3,380,896 + ECD_03243 0.85 -0.1 3,380,902 + ECD_03243 0.85 -0.8 3,380,902 + ECD_03243 0.85 +0.6 3,380,903 - ECD_03243 0.86 +0.1 3,380,903 - ECD_03243 0.86 +0.3 3,381,034 + -1.6 3,381,058 + -0.0 3,381,059 - +0.3 3,381,059 - -1.1 3,381,085 + ECD_03244 0.23 +0.6 3,381,147 - ECD_03244 0.38 +0.1 3,381,168 - ECD_03244 0.43 -0.5 3,381,168 - ECD_03244 0.43 +0.5 3,381,237 - ECD_03244 0.60 -0.9 3,381,311 + ECD_03244 0.79 +0.1 3,381,311 + ECD_03244 0.79 +0.1 3,381,312 - ECD_03244 0.79 +0.2 3,381,329 - ECD_03244 0.83 +0.4 3,381,344 - ECD_03244 0.87 +0.6 3,381,367 + +0.2 3,381,367 + -1.0 3,381,368 - +1.3 3,381,414 + +0.4 3,381,414 + +0.5 3,381,583 - ECD_03245 0.44 -0.2 3,381,653 - ECD_03245 0.60 +0.3 3,381,696 + ECD_03245 0.70 +1.0 3,381,729 + ECD_03245 0.78 +0.2 3,381,743 + ECD_03245 0.81 +0.6 3,381,747 + ECD_03245 0.82 +0.6 3,381,747 + ECD_03245 0.82 +1.5 3,381,844 + +1.0 3,381,940 + ECD_03246 0.24 +0.5 3,381,949 + ECD_03246 0.26 +0.3 3,382,117 + ECD_03246 0.57 +0.3 3,382,156 + ECD_03246 0.64 +0.9 3,382,156 + ECD_03246 0.64 +0.0 3,382,156 + ECD_03246 0.64 -1.2 3,382,157 - ECD_03246 0.64 -0.9 3,382,202 - ECD_03246 0.72 -0.8 3,382,202 - ECD_03246 0.72 -0.5 3,382,234 + ECD_03246 0.78 +0.1 3,382,235 - ECD_03246 0.79 -0.1 3,382,237 + ECD_03246 0.79 +0.6 3,382,355 - -0.2 3,382,467 + ECD_03247 0.15 +1.0 3,382,467 + ECD_03247 0.15 -0.5 3,382,618 - ECD_03247 0.34 -0.6 3,382,697 + ECD_03247 0.44 +0.0 3,382,698 - ECD_03247 0.45 -1.2 3,382,739 + ECD_03247 0.50 +1.1 3,382,740 - ECD_03247 0.50 -0.5 3,382,741 + ECD_03247 0.50 +0.1 3,382,741 + ECD_03247 0.50 +0.8 3,382,742 - ECD_03247 0.50 -0.4 3,382,742 - ECD_03247 0.50 +1.4 3,382,769 - ECD_03247 0.54 -0.1
Or see this region's nucleotide sequence