Strain Fitness in Escherichia coli BL21 around ECD_02991

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02990 and ECD_02991 are separated by 29 nucleotidesECD_02991 and ECD_02992 are separated by 15 nucleotides ECD_02990: ECD_02990 - tartronate semialdehyde reductase, at 3,138,061 to 3,138,951 _02990 ECD_02991: ECD_02991 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 3,138,981 to 3,139,751 _02991 ECD_02992: ECD_02992 - putative (D)-galactarate transporter, at 3,139,767 to 3,141,101 _02992 Position (kb) 3138 3139 3140Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3138.038 kb on + strandat 3138.038 kb on + strandat 3138.070 kb on - strandat 3138.099 kb on - strandat 3138.099 kb on - strandat 3138.115 kb on - strandat 3138.130 kb on + strandat 3138.210 kb on + strand, within ECD_02990at 3138.235 kb on - strand, within ECD_02990at 3138.235 kb on - strand, within ECD_02990at 3138.238 kb on - strand, within ECD_02990at 3138.238 kb on - strand, within ECD_02990at 3138.238 kb on - strand, within ECD_02990at 3138.250 kb on - strand, within ECD_02990at 3138.447 kb on + strand, within ECD_02990at 3138.506 kb on + strand, within ECD_02990at 3138.507 kb on - strand, within ECD_02990at 3138.509 kb on + strand, within ECD_02990at 3138.509 kb on + strand, within ECD_02990at 3138.510 kb on - strand, within ECD_02990at 3138.510 kb on - strand, within ECD_02990at 3138.510 kb on - strand, within ECD_02990at 3138.604 kb on - strand, within ECD_02990at 3138.661 kb on - strand, within ECD_02990at 3138.668 kb on + strand, within ECD_02990at 3138.680 kb on - strand, within ECD_02990at 3138.685 kb on - strand, within ECD_02990at 3138.763 kb on + strand, within ECD_02990at 3138.841 kb on - strand, within ECD_02990at 3138.841 kb on - strand, within ECD_02990at 3138.898 kb on - strandat 3138.931 kb on - strandat 3138.951 kb on + strandat 3138.952 kb on - strandat 3139.167 kb on + strand, within ECD_02991at 3139.200 kb on + strand, within ECD_02991at 3139.274 kb on + strand, within ECD_02991at 3139.279 kb on - strand, within ECD_02991at 3139.297 kb on - strand, within ECD_02991at 3139.310 kb on + strand, within ECD_02991at 3139.310 kb on + strand, within ECD_02991at 3139.311 kb on - strand, within ECD_02991at 3139.311 kb on - strand, within ECD_02991at 3139.361 kb on + strand, within ECD_02991at 3139.362 kb on - strand, within ECD_02991at 3139.453 kb on - strand, within ECD_02991at 3139.473 kb on - strand, within ECD_02991at 3139.475 kb on - strand, within ECD_02991at 3139.499 kb on + strand, within ECD_02991at 3139.533 kb on + strand, within ECD_02991at 3139.533 kb on + strand, within ECD_02991at 3139.534 kb on - strand, within ECD_02991at 3139.756 kb on + strandat 3139.758 kb on + strandat 3139.758 kb on + strandat 3139.759 kb on - strandat 3139.768 kb on + strandat 3139.769 kb on - strandat 3139.785 kb on - strandat 3139.790 kb on + strandat 3139.803 kb on + strandat 3139.803 kb on + strandat 3139.884 kb on + strandat 3139.885 kb on - strandat 3139.891 kb on + strandat 3140.074 kb on + strand, within ECD_02992at 3140.075 kb on - strand, within ECD_02992at 3140.075 kb on - strand, within ECD_02992at 3140.075 kb on - strand, within ECD_02992at 3140.075 kb on - strand, within ECD_02992at 3140.075 kb on - strand, within ECD_02992at 3140.078 kb on + strand, within ECD_02992at 3140.078 kb on + strand, within ECD_02992at 3140.078 kb on + strand, within ECD_02992at 3140.078 kb on + strand, within ECD_02992at 3140.078 kb on + strand, within ECD_02992at 3140.079 kb on - strand, within ECD_02992at 3140.082 kb on + strand, within ECD_02992at 3140.082 kb on + strand, within ECD_02992at 3140.083 kb on - strand, within ECD_02992at 3140.083 kb on - strand, within ECD_02992at 3140.083 kb on - strand, within ECD_02992at 3140.083 kb on - strand, within ECD_02992at 3140.124 kb on + strand, within ECD_02992at 3140.125 kb on - strand, within ECD_02992at 3140.129 kb on + strand, within ECD_02992at 3140.129 kb on + strand, within ECD_02992at 3140.130 kb on - strand, within ECD_02992at 3140.130 kb on - strand, within ECD_02992at 3140.130 kb on - strand, within ECD_02992at 3140.130 kb on - strand, within ECD_02992at 3140.275 kb on + strand, within ECD_02992at 3140.324 kb on - strand, within ECD_02992at 3140.377 kb on + strand, within ECD_02992at 3140.378 kb on - strand, within ECD_02992at 3140.378 kb on - strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.480 kb on + strand, within ECD_02992at 3140.481 kb on - strand, within ECD_02992at 3140.481 kb on - strand, within ECD_02992at 3140.481 kb on - strand, within ECD_02992at 3140.481 kb on - strand, within ECD_02992at 3140.481 kb on - strand, within ECD_02992at 3140.501 kb on + strand, within ECD_02992

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,138,038 + -0.6
3,138,038 + -0.1
3,138,070 - -0.1
3,138,099 - -0.2
3,138,099 - -0.3
3,138,115 - +0.5
3,138,130 + -0.5
3,138,210 + ECD_02990 0.17 -1.3
3,138,235 - ECD_02990 0.20 -1.0
3,138,235 - ECD_02990 0.20 -1.0
3,138,238 - ECD_02990 0.20 +0.6
3,138,238 - ECD_02990 0.20 -2.2
3,138,238 - ECD_02990 0.20 -3.2
3,138,250 - ECD_02990 0.21 -0.4
3,138,447 + ECD_02990 0.43 +0.1
3,138,506 + ECD_02990 0.50 -0.2
3,138,507 - ECD_02990 0.50 -0.3
3,138,509 + ECD_02990 0.50 +0.1
3,138,509 + ECD_02990 0.50 +0.6
3,138,510 - ECD_02990 0.50 -0.3
3,138,510 - ECD_02990 0.50 -0.5
3,138,510 - ECD_02990 0.50 +1.1
3,138,604 - ECD_02990 0.61 +0.4
3,138,661 - ECD_02990 0.67 -0.4
3,138,668 + ECD_02990 0.68 +0.4
3,138,680 - ECD_02990 0.69 +0.7
3,138,685 - ECD_02990 0.70 +0.4
3,138,763 + ECD_02990 0.79 -1.6
3,138,841 - ECD_02990 0.88 -0.5
3,138,841 - ECD_02990 0.88 +0.4
3,138,898 - +0.2
3,138,931 - -2.6
3,138,951 + -1.0
3,138,952 - +0.2
3,139,167 + ECD_02991 0.24 +1.0
3,139,200 + ECD_02991 0.28 +0.5
3,139,274 + ECD_02991 0.38 +0.9
3,139,279 - ECD_02991 0.39 +0.4
3,139,297 - ECD_02991 0.41 +0.7
3,139,310 + ECD_02991 0.43 +0.4
3,139,310 + ECD_02991 0.43 -1.0
3,139,311 - ECD_02991 0.43 +0.4
3,139,311 - ECD_02991 0.43 -0.3
3,139,361 + ECD_02991 0.49 +0.6
3,139,362 - ECD_02991 0.49 -0.2
3,139,453 - ECD_02991 0.61 -0.1
3,139,473 - ECD_02991 0.64 +0.4
3,139,475 - ECD_02991 0.64 +0.2
3,139,499 + ECD_02991 0.67 +0.1
3,139,533 + ECD_02991 0.72 +1.6
3,139,533 + ECD_02991 0.72 +0.2
3,139,534 - ECD_02991 0.72 +0.3
3,139,756 + -0.5
3,139,758 + +0.2
3,139,758 + +1.4
3,139,759 - +0.0
3,139,768 + +0.4
3,139,769 - +0.4
3,139,785 - -0.5
3,139,790 + -0.3
3,139,803 + -2.2
3,139,803 + +0.8
3,139,884 + +0.2
3,139,885 - -0.2
3,139,891 + +0.4
3,140,074 + ECD_02992 0.23 +0.1
3,140,075 - ECD_02992 0.23 +1.1
3,140,075 - ECD_02992 0.23 +0.2
3,140,075 - ECD_02992 0.23 -0.6
3,140,075 - ECD_02992 0.23 +0.0
3,140,075 - ECD_02992 0.23 +0.0
3,140,078 + ECD_02992 0.23 +0.0
3,140,078 + ECD_02992 0.23 +0.7
3,140,078 + ECD_02992 0.23 +0.7
3,140,078 + ECD_02992 0.23 +0.2
3,140,078 + ECD_02992 0.23 -0.0
3,140,079 - ECD_02992 0.23 -2.0
3,140,082 + ECD_02992 0.24 -0.3
3,140,082 + ECD_02992 0.24 -0.6
3,140,083 - ECD_02992 0.24 -1.4
3,140,083 - ECD_02992 0.24 -0.6
3,140,083 - ECD_02992 0.24 -1.2
3,140,083 - ECD_02992 0.24 -0.1
3,140,124 + ECD_02992 0.27 +1.8
3,140,125 - ECD_02992 0.27 -0.2
3,140,129 + ECD_02992 0.27 -0.1
3,140,129 + ECD_02992 0.27 -0.4
3,140,130 - ECD_02992 0.27 -1.2
3,140,130 - ECD_02992 0.27 +0.4
3,140,130 - ECD_02992 0.27 +0.3
3,140,130 - ECD_02992 0.27 +0.4
3,140,275 + ECD_02992 0.38 +0.4
3,140,324 - ECD_02992 0.42 +0.4
3,140,377 + ECD_02992 0.46 -0.6
3,140,378 - ECD_02992 0.46 +0.7
3,140,378 - ECD_02992 0.46 -0.5
3,140,480 + ECD_02992 0.53 +0.6
3,140,480 + ECD_02992 0.53 -1.1
3,140,480 + ECD_02992 0.53 -0.6
3,140,480 + ECD_02992 0.53 +0.1
3,140,480 + ECD_02992 0.53 +0.3
3,140,480 + ECD_02992 0.53 -0.5
3,140,480 + ECD_02992 0.53 -0.0
3,140,481 - ECD_02992 0.53 +0.9
3,140,481 - ECD_02992 0.53 +0.2
3,140,481 - ECD_02992 0.53 -0.1
3,140,481 - ECD_02992 0.53 +0.2
3,140,481 - ECD_02992 0.53 +0.5
3,140,501 + ECD_02992 0.55 -0.6

Or see this region's nucleotide sequence