Strain Fitness in Escherichia coli BL21 around ECD_02687

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02686 and ECD_02687 are separated by 121 nucleotidesECD_02687 and ECD_02688 overlap by 14 nucleotidesECD_02688 and ECD_02689 are separated by 128 nucleotides ECD_02686: ECD_02686 - diaminopimelate decarboxylase, PLP-binding, at 2,815,919 to 2,817,181 _02686 ECD_02687: ECD_02687 - transcriptional activator of lysA; autorepressor, at 2,817,303 to 2,818,238 _02687 ECD_02688: ECD_02688 - Asp/Glu_racemase family protein, at 2,818,225 to 2,818,917 _02688 ECD_02689: ECD_02689 - arabinose transporter, at 2,819,046 to 2,820,464 _02689 Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -2 -1 0 1 2at 2816.339 kb on - strand, within ECD_02686at 2816.339 kb on - strand, within ECD_02686at 2816.343 kb on - strand, within ECD_02686at 2816.343 kb on - strand, within ECD_02686at 2816.343 kb on - strand, within ECD_02686at 2816.346 kb on - strand, within ECD_02686at 2816.346 kb on - strand, within ECD_02686at 2816.449 kb on - strand, within ECD_02686at 2816.452 kb on - strand, within ECD_02686at 2816.452 kb on - strand, within ECD_02686at 2816.452 kb on - strand, within ECD_02686at 2816.452 kb on - strand, within ECD_02686at 2816.452 kb on - strand, within ECD_02686at 2816.488 kb on - strand, within ECD_02686at 2816.519 kb on - strand, within ECD_02686at 2816.519 kb on - strand, within ECD_02686at 2816.526 kb on - strand, within ECD_02686at 2816.561 kb on - strand, within ECD_02686at 2816.561 kb on - strand, within ECD_02686at 2816.561 kb on - strand, within ECD_02686at 2816.590 kb on - strand, within ECD_02686at 2816.649 kb on - strand, within ECD_02686at 2816.649 kb on - strand, within ECD_02686at 2816.649 kb on - strand, within ECD_02686at 2816.649 kb on - strand, within ECD_02686at 2816.649 kb on - strand, within ECD_02686at 2816.649 kb on - strand, within ECD_02686at 2816.680 kb on - strand, within ECD_02686at 2816.680 kb on - strand, within ECD_02686at 2816.687 kb on - strand, within ECD_02686at 2816.729 kb on - strand, within ECD_02686at 2816.729 kb on - strand, within ECD_02686at 2816.729 kb on - strand, within ECD_02686at 2816.729 kb on - strand, within ECD_02686at 2816.807 kb on - strand, within ECD_02686at 2816.920 kb on - strand, within ECD_02686at 2816.920 kb on - strand, within ECD_02686at 2816.943 kb on - strand, within ECD_02686at 2816.943 kb on - strand, within ECD_02686at 2816.943 kb on - strand, within ECD_02686at 2816.943 kb on - strand, within ECD_02686at 2816.943 kb on - strand, within ECD_02686at 2816.943 kb on - strand, within ECD_02686at 2817.002 kb on - strand, within ECD_02686at 2817.002 kb on - strand, within ECD_02686at 2817.008 kb on - strand, within ECD_02686at 2817.008 kb on - strand, within ECD_02686at 2817.077 kb on - strandat 2817.091 kb on - strandat 2817.091 kb on - strandat 2817.196 kb on - strandat 2817.196 kb on - strandat 2817.196 kb on - strandat 2817.249 kb on + strandat 2817.302 kb on - strandat 2817.319 kb on + strandat 2817.320 kb on - strandat 2817.320 kb on - strandat 2817.386 kb on - strandat 2817.463 kb on + strand, within ECD_02687at 2817.464 kb on - strand, within ECD_02687at 2817.475 kb on + strand, within ECD_02687at 2817.476 kb on - strand, within ECD_02687at 2817.593 kb on + strand, within ECD_02687at 2817.593 kb on + strand, within ECD_02687at 2817.593 kb on + strand, within ECD_02687at 2817.594 kb on - strand, within ECD_02687at 2817.676 kb on + strand, within ECD_02687at 2817.676 kb on + strand, within ECD_02687at 2817.677 kb on - strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.681 kb on - strand, within ECD_02687at 2817.703 kb on + strand, within ECD_02687at 2817.704 kb on - strand, within ECD_02687at 2817.739 kb on + strand, within ECD_02687at 2817.762 kb on - strand, within ECD_02687at 2817.800 kb on - strand, within ECD_02687at 2817.800 kb on - strand, within ECD_02687at 2817.800 kb on - strand, within ECD_02687at 2817.850 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.883 kb on - strand, within ECD_02687at 2817.883 kb on - strand, within ECD_02687at 2817.883 kb on - strand, within ECD_02687at 2817.909 kb on + strand, within ECD_02687at 2817.931 kb on + strand, within ECD_02687at 2817.931 kb on + strand, within ECD_02687at 2817.932 kb on - strand, within ECD_02687at 2817.932 kb on - strand, within ECD_02687at 2817.932 kb on - strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.936 kb on - strand, within ECD_02687at 2817.967 kb on + strand, within ECD_02687at 2817.967 kb on + strand, within ECD_02687at 2818.019 kb on + strand, within ECD_02687at 2818.019 kb on + strand, within ECD_02687at 2818.048 kb on + strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.089 kb on - strand, within ECD_02687at 2818.089 kb on - strand, within ECD_02687at 2818.160 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.172 kb on - strandat 2818.172 kb on - strandat 2818.172 kb on - strandat 2818.211 kb on + strandat 2818.211 kb on + strandat 2818.212 kb on - strandat 2818.226 kb on + strandat 2818.236 kb on + strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.386 kb on - strand, within ECD_02688at 2818.389 kb on - strand, within ECD_02688at 2818.408 kb on - strand, within ECD_02688at 2818.477 kb on - strand, within ECD_02688at 2818.538 kb on + strand, within ECD_02688at 2818.539 kb on - strand, within ECD_02688at 2818.539 kb on - strand, within ECD_02688at 2818.612 kb on + strand, within ECD_02688at 2818.613 kb on - strand, within ECD_02688at 2818.656 kb on + strand, within ECD_02688at 2818.657 kb on - strand, within ECD_02688at 2818.657 kb on - strand, within ECD_02688at 2818.666 kb on - strand, within ECD_02688at 2818.671 kb on + strand, within ECD_02688at 2818.672 kb on - strand, within ECD_02688at 2818.675 kb on + strand, within ECD_02688at 2818.675 kb on + strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.683 kb on + strand, within ECD_02688at 2818.683 kb on + strand, within ECD_02688at 2818.684 kb on - strand, within ECD_02688at 2818.684 kb on - strand, within ECD_02688at 2818.705 kb on + strand, within ECD_02688at 2818.743 kb on + strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.794 kb on + strand, within ECD_02688at 2818.794 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.799 kb on - strand, within ECD_02688at 2818.840 kb on - strand, within ECD_02688at 2818.853 kb on - strandat 2818.853 kb on - strandat 2818.853 kb on - strandat 2818.862 kb on + strandat 2818.862 kb on + strandat 2818.865 kb on + strandat 2818.999 kb on + strandat 2819.000 kb on - strandat 2819.000 kb on - strandat 2819.023 kb on + strandat 2819.023 kb on + strandat 2819.023 kb on + strandat 2819.024 kb on - strandat 2819.024 kb on - strandat 2819.024 kb on - strandat 2819.096 kb on + strandat 2819.097 kb on - strandat 2819.097 kb on - strandat 2819.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,816,339 - ECD_02686 0.33 +0.3
2,816,339 - ECD_02686 0.33 +0.1
2,816,343 - ECD_02686 0.34 -1.5
2,816,343 - ECD_02686 0.34 +0.2
2,816,343 - ECD_02686 0.34 -0.4
2,816,346 - ECD_02686 0.34 +1.1
2,816,346 - ECD_02686 0.34 +0.1
2,816,449 - ECD_02686 0.42 +0.2
2,816,452 - ECD_02686 0.42 +0.4
2,816,452 - ECD_02686 0.42 -1.2
2,816,452 - ECD_02686 0.42 -0.2
2,816,452 - ECD_02686 0.42 +0.2
2,816,452 - ECD_02686 0.42 -0.1
2,816,488 - ECD_02686 0.45 -0.0
2,816,519 - ECD_02686 0.48 -0.0
2,816,519 - ECD_02686 0.48 -0.3
2,816,526 - ECD_02686 0.48 +1.2
2,816,561 - ECD_02686 0.51 +0.0
2,816,561 - ECD_02686 0.51 +0.0
2,816,561 - ECD_02686 0.51 -1.6
2,816,590 - ECD_02686 0.53 -0.1
2,816,649 - ECD_02686 0.58 +0.8
2,816,649 - ECD_02686 0.58 +0.4
2,816,649 - ECD_02686 0.58 +0.3
2,816,649 - ECD_02686 0.58 +1.1
2,816,649 - ECD_02686 0.58 +0.6
2,816,649 - ECD_02686 0.58 -0.3
2,816,680 - ECD_02686 0.60 -0.3
2,816,680 - ECD_02686 0.60 -2.5
2,816,687 - ECD_02686 0.61 +1.0
2,816,729 - ECD_02686 0.64 +0.8
2,816,729 - ECD_02686 0.64 +0.1
2,816,729 - ECD_02686 0.64 +1.3
2,816,729 - ECD_02686 0.64 +0.1
2,816,807 - ECD_02686 0.70 +1.3
2,816,920 - ECD_02686 0.79 -0.4
2,816,920 - ECD_02686 0.79 +0.5
2,816,943 - ECD_02686 0.81 -0.7
2,816,943 - ECD_02686 0.81 -0.2
2,816,943 - ECD_02686 0.81 -0.5
2,816,943 - ECD_02686 0.81 +0.2
2,816,943 - ECD_02686 0.81 -1.1
2,816,943 - ECD_02686 0.81 +0.3
2,817,002 - ECD_02686 0.86 +0.7
2,817,002 - ECD_02686 0.86 -0.3
2,817,008 - ECD_02686 0.86 -0.7
2,817,008 - ECD_02686 0.86 -0.2
2,817,077 - -0.0
2,817,091 - +0.4
2,817,091 - +0.3
2,817,196 - -1.1
2,817,196 - +1.4
2,817,196 - +0.4
2,817,249 + +0.7
2,817,302 - +0.1
2,817,319 + +0.4
2,817,320 - +0.8
2,817,320 - +0.3
2,817,386 - +1.1
2,817,463 + ECD_02687 0.17 +0.9
2,817,464 - ECD_02687 0.17 -0.2
2,817,475 + ECD_02687 0.18 -0.5
2,817,476 - ECD_02687 0.18 -0.5
2,817,593 + ECD_02687 0.31 -1.2
2,817,593 + ECD_02687 0.31 +0.7
2,817,593 + ECD_02687 0.31 +0.3
2,817,594 - ECD_02687 0.31 +0.5
2,817,676 + ECD_02687 0.40 +0.1
2,817,676 + ECD_02687 0.40 -1.7
2,817,677 - ECD_02687 0.40 +1.6
2,817,680 + ECD_02687 0.40 -0.7
2,817,680 + ECD_02687 0.40 -1.0
2,817,680 + ECD_02687 0.40 +0.0
2,817,680 + ECD_02687 0.40 +0.0
2,817,681 - ECD_02687 0.40 -1.3
2,817,703 + ECD_02687 0.43 -0.1
2,817,704 - ECD_02687 0.43 +1.6
2,817,739 + ECD_02687 0.47 +0.4
2,817,762 - ECD_02687 0.49 +0.3
2,817,800 - ECD_02687 0.53 -0.1
2,817,800 - ECD_02687 0.53 +0.4
2,817,800 - ECD_02687 0.53 +0.3
2,817,850 + ECD_02687 0.58 -0.7
2,817,882 + ECD_02687 0.62 +0.9
2,817,882 + ECD_02687 0.62 +0.5
2,817,882 + ECD_02687 0.62 -0.7
2,817,882 + ECD_02687 0.62 -0.5
2,817,882 + ECD_02687 0.62 -0.6
2,817,882 + ECD_02687 0.62 -0.5
2,817,882 + ECD_02687 0.62 -0.7
2,817,883 - ECD_02687 0.62 +1.6
2,817,883 - ECD_02687 0.62 +0.3
2,817,883 - ECD_02687 0.62 +0.0
2,817,909 + ECD_02687 0.65 -0.7
2,817,931 + ECD_02687 0.67 -0.8
2,817,931 + ECD_02687 0.67 -0.2
2,817,932 - ECD_02687 0.67 -1.1
2,817,932 - ECD_02687 0.67 -0.1
2,817,932 - ECD_02687 0.67 +1.3
2,817,935 + ECD_02687 0.68 -0.8
2,817,935 + ECD_02687 0.68 +0.8
2,817,935 + ECD_02687 0.68 -1.8
2,817,935 + ECD_02687 0.68 +0.3
2,817,936 - ECD_02687 0.68 -1.0
2,817,967 + ECD_02687 0.71 -0.1
2,817,967 + ECD_02687 0.71 +0.4
2,818,019 + ECD_02687 0.76 -1.2
2,818,019 + ECD_02687 0.76 -0.9
2,818,048 + ECD_02687 0.80 +0.3
2,818,054 - ECD_02687 0.80 +0.1
2,818,054 - ECD_02687 0.80 -0.4
2,818,054 - ECD_02687 0.80 -2.1
2,818,089 - ECD_02687 0.84 +0.0
2,818,089 - ECD_02687 0.84 -1.2
2,818,160 + +0.8
2,818,171 + -0.9
2,818,171 + +0.3
2,818,171 + -0.1
2,818,171 + +1.5
2,818,172 - +0.6
2,818,172 - +2.3
2,818,172 - -0.5
2,818,211 + +0.3
2,818,211 + -1.7
2,818,212 - -0.3
2,818,226 + +0.5
2,818,236 + -0.2
2,818,237 - -0.5
2,818,237 - -1.3
2,818,237 - -0.5
2,818,237 - +0.0
2,818,237 - +1.1
2,818,386 - ECD_02688 0.23 +0.3
2,818,389 - ECD_02688 0.24 -0.6
2,818,408 - ECD_02688 0.26 -0.4
2,818,477 - ECD_02688 0.36 -0.1
2,818,538 + ECD_02688 0.45 +0.1
2,818,539 - ECD_02688 0.45 +0.2
2,818,539 - ECD_02688 0.45 +0.2
2,818,612 + ECD_02688 0.56 +0.7
2,818,613 - ECD_02688 0.56 +0.5
2,818,656 + ECD_02688 0.62 +0.8
2,818,657 - ECD_02688 0.62 -0.9
2,818,657 - ECD_02688 0.62 +0.7
2,818,666 - ECD_02688 0.64 +0.0
2,818,671 + ECD_02688 0.64 +0.3
2,818,672 - ECD_02688 0.65 -0.9
2,818,675 + ECD_02688 0.65 +0.0
2,818,675 + ECD_02688 0.65 -1.9
2,818,676 - ECD_02688 0.65 +0.3
2,818,676 - ECD_02688 0.65 +1.3
2,818,676 - ECD_02688 0.65 -0.1
2,818,676 - ECD_02688 0.65 +1.7
2,818,676 - ECD_02688 0.65 -0.4
2,818,676 - ECD_02688 0.65 -0.1
2,818,683 + ECD_02688 0.66 -2.1
2,818,683 + ECD_02688 0.66 -1.1
2,818,684 - ECD_02688 0.66 +0.9
2,818,684 - ECD_02688 0.66 +0.3
2,818,705 + ECD_02688 0.69 -0.6
2,818,743 + ECD_02688 0.75 +0.9
2,818,775 - ECD_02688 0.79 -0.2
2,818,775 - ECD_02688 0.79 -0.6
2,818,775 - ECD_02688 0.79 -0.5
2,818,775 - ECD_02688 0.79 -1.5
2,818,775 - ECD_02688 0.79 -0.6
2,818,794 + ECD_02688 0.82 +0.9
2,818,794 + ECD_02688 0.82 -1.0
2,818,798 + ECD_02688 0.83 +0.4
2,818,798 + ECD_02688 0.83 -1.1
2,818,798 + ECD_02688 0.83 -0.1
2,818,798 + ECD_02688 0.83 +0.2
2,818,799 - ECD_02688 0.83 +0.3
2,818,840 - ECD_02688 0.89 +0.5
2,818,853 - -0.6
2,818,853 - -1.0
2,818,853 - -0.7
2,818,862 + -0.3
2,818,862 + -0.5
2,818,865 + -0.4
2,818,999 + -0.5
2,819,000 - +1.5
2,819,000 - -0.3
2,819,023 + +0.3
2,819,023 + +1.1
2,819,023 + -0.2
2,819,024 - +0.0
2,819,024 - -0.2
2,819,024 - +0.1
2,819,096 + +1.1
2,819,097 - -0.1
2,819,097 - +0.7
2,819,173 + +0.7

Or see this region's nucleotide sequence