Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02686 and ECD_02687 are separated by 121 nucleotides ECD_02687 and ECD_02688 overlap by 14 nucleotides ECD_02688 and ECD_02689 are separated by 128 nucleotides
ECD_02686: ECD_02686 - diaminopimelate decarboxylase, PLP-binding, at 2,815,919 to 2,817,181
_02686
ECD_02687: ECD_02687 - transcriptional activator of lysA; autorepressor, at 2,817,303 to 2,818,238
_02687
ECD_02688: ECD_02688 - Asp/Glu_racemase family protein, at 2,818,225 to 2,818,917
_02688
ECD_02689: ECD_02689 - arabinose transporter, at 2,819,046 to 2,820,464
_02689
Position (kb)
2817
2818
2819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2816.339 kb on - strand, within ECD_02686 at 2816.339 kb on - strand, within ECD_02686 at 2816.343 kb on - strand, within ECD_02686 at 2816.343 kb on - strand, within ECD_02686 at 2816.343 kb on - strand, within ECD_02686 at 2816.346 kb on - strand, within ECD_02686 at 2816.346 kb on - strand, within ECD_02686 at 2816.449 kb on - strand, within ECD_02686 at 2816.452 kb on - strand, within ECD_02686 at 2816.452 kb on - strand, within ECD_02686 at 2816.452 kb on - strand, within ECD_02686 at 2816.452 kb on - strand, within ECD_02686 at 2816.452 kb on - strand, within ECD_02686 at 2816.488 kb on - strand, within ECD_02686 at 2816.519 kb on - strand, within ECD_02686 at 2816.519 kb on - strand, within ECD_02686 at 2816.526 kb on - strand, within ECD_02686 at 2816.561 kb on - strand, within ECD_02686 at 2816.561 kb on - strand, within ECD_02686 at 2816.561 kb on - strand, within ECD_02686 at 2816.590 kb on - strand, within ECD_02686 at 2816.649 kb on - strand, within ECD_02686 at 2816.649 kb on - strand, within ECD_02686 at 2816.649 kb on - strand, within ECD_02686 at 2816.649 kb on - strand, within ECD_02686 at 2816.649 kb on - strand, within ECD_02686 at 2816.649 kb on - strand, within ECD_02686 at 2816.680 kb on - strand, within ECD_02686 at 2816.680 kb on - strand, within ECD_02686 at 2816.687 kb on - strand, within ECD_02686 at 2816.729 kb on - strand, within ECD_02686 at 2816.729 kb on - strand, within ECD_02686 at 2816.729 kb on - strand, within ECD_02686 at 2816.729 kb on - strand, within ECD_02686 at 2816.807 kb on - strand, within ECD_02686 at 2816.920 kb on - strand, within ECD_02686 at 2816.920 kb on - strand, within ECD_02686 at 2816.943 kb on - strand, within ECD_02686 at 2816.943 kb on - strand, within ECD_02686 at 2816.943 kb on - strand, within ECD_02686 at 2816.943 kb on - strand, within ECD_02686 at 2816.943 kb on - strand, within ECD_02686 at 2816.943 kb on - strand, within ECD_02686 at 2817.002 kb on - strand, within ECD_02686 at 2817.002 kb on - strand, within ECD_02686 at 2817.008 kb on - strand, within ECD_02686 at 2817.008 kb on - strand, within ECD_02686 at 2817.077 kb on - strand at 2817.091 kb on - strand at 2817.091 kb on - strand at 2817.196 kb on - strand at 2817.196 kb on - strand at 2817.196 kb on - strand at 2817.249 kb on + strand at 2817.302 kb on - strand at 2817.319 kb on + strand at 2817.320 kb on - strand at 2817.320 kb on - strand at 2817.386 kb on - strand at 2817.463 kb on + strand, within ECD_02687 at 2817.464 kb on - strand, within ECD_02687 at 2817.475 kb on + strand, within ECD_02687 at 2817.476 kb on - strand, within ECD_02687 at 2817.593 kb on + strand, within ECD_02687 at 2817.593 kb on + strand, within ECD_02687 at 2817.593 kb on + strand, within ECD_02687 at 2817.594 kb on - strand, within ECD_02687 at 2817.676 kb on + strand, within ECD_02687 at 2817.676 kb on + strand, within ECD_02687 at 2817.677 kb on - strand, within ECD_02687 at 2817.680 kb on + strand, within ECD_02687 at 2817.680 kb on + strand, within ECD_02687 at 2817.680 kb on + strand, within ECD_02687 at 2817.680 kb on + strand, within ECD_02687 at 2817.681 kb on - strand, within ECD_02687 at 2817.703 kb on + strand, within ECD_02687 at 2817.704 kb on - strand, within ECD_02687 at 2817.739 kb on + strand, within ECD_02687 at 2817.762 kb on - strand, within ECD_02687 at 2817.800 kb on - strand, within ECD_02687 at 2817.800 kb on - strand, within ECD_02687 at 2817.800 kb on - strand, within ECD_02687 at 2817.850 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.882 kb on + strand, within ECD_02687 at 2817.883 kb on - strand, within ECD_02687 at 2817.883 kb on - strand, within ECD_02687 at 2817.883 kb on - strand, within ECD_02687 at 2817.909 kb on + strand, within ECD_02687 at 2817.931 kb on + strand, within ECD_02687 at 2817.931 kb on + strand, within ECD_02687 at 2817.932 kb on - strand, within ECD_02687 at 2817.932 kb on - strand, within ECD_02687 at 2817.932 kb on - strand, within ECD_02687 at 2817.935 kb on + strand, within ECD_02687 at 2817.935 kb on + strand, within ECD_02687 at 2817.935 kb on + strand, within ECD_02687 at 2817.935 kb on + strand, within ECD_02687 at 2817.936 kb on - strand, within ECD_02687 at 2817.967 kb on + strand, within ECD_02687 at 2817.967 kb on + strand, within ECD_02687 at 2818.019 kb on + strand, within ECD_02687 at 2818.019 kb on + strand, within ECD_02687 at 2818.048 kb on + strand, within ECD_02687 at 2818.054 kb on - strand, within ECD_02687 at 2818.054 kb on - strand, within ECD_02687 at 2818.054 kb on - strand, within ECD_02687 at 2818.089 kb on - strand, within ECD_02687 at 2818.089 kb on - strand, within ECD_02687 at 2818.160 kb on + strand at 2818.171 kb on + strand at 2818.171 kb on + strand at 2818.171 kb on + strand at 2818.171 kb on + strand at 2818.172 kb on - strand at 2818.172 kb on - strand at 2818.172 kb on - strand at 2818.211 kb on + strand at 2818.211 kb on + strand at 2818.212 kb on - strand at 2818.226 kb on + strand at 2818.236 kb on + strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.237 kb on - strand at 2818.386 kb on - strand, within ECD_02688 at 2818.389 kb on - strand, within ECD_02688 at 2818.408 kb on - strand, within ECD_02688 at 2818.477 kb on - strand, within ECD_02688 at 2818.538 kb on + strand, within ECD_02688 at 2818.539 kb on - strand, within ECD_02688 at 2818.539 kb on - strand, within ECD_02688 at 2818.612 kb on + strand, within ECD_02688 at 2818.613 kb on - strand, within ECD_02688 at 2818.656 kb on + strand, within ECD_02688 at 2818.657 kb on - strand, within ECD_02688 at 2818.657 kb on - strand, within ECD_02688 at 2818.666 kb on - strand, within ECD_02688 at 2818.671 kb on + strand, within ECD_02688 at 2818.672 kb on - strand, within ECD_02688 at 2818.675 kb on + strand, within ECD_02688 at 2818.675 kb on + strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.676 kb on - strand, within ECD_02688 at 2818.683 kb on + strand, within ECD_02688 at 2818.683 kb on + strand, within ECD_02688 at 2818.684 kb on - strand, within ECD_02688 at 2818.684 kb on - strand, within ECD_02688 at 2818.705 kb on + strand, within ECD_02688 at 2818.743 kb on + strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.775 kb on - strand, within ECD_02688 at 2818.794 kb on + strand, within ECD_02688 at 2818.794 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.798 kb on + strand, within ECD_02688 at 2818.799 kb on - strand, within ECD_02688 at 2818.840 kb on - strand, within ECD_02688 at 2818.853 kb on - strand at 2818.853 kb on - strand at 2818.853 kb on - strand at 2818.862 kb on + strand at 2818.862 kb on + strand at 2818.865 kb on + strand at 2818.999 kb on + strand at 2819.000 kb on - strand at 2819.000 kb on - strand at 2819.023 kb on + strand at 2819.023 kb on + strand at 2819.023 kb on + strand at 2819.024 kb on - strand at 2819.024 kb on - strand at 2819.024 kb on - strand at 2819.096 kb on + strand at 2819.097 kb on - strand at 2819.097 kb on - strand at 2819.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,816,339 - ECD_02686 0.33 +0.3 2,816,339 - ECD_02686 0.33 +0.1 2,816,343 - ECD_02686 0.34 -1.5 2,816,343 - ECD_02686 0.34 +0.2 2,816,343 - ECD_02686 0.34 -0.4 2,816,346 - ECD_02686 0.34 +1.1 2,816,346 - ECD_02686 0.34 +0.1 2,816,449 - ECD_02686 0.42 +0.2 2,816,452 - ECD_02686 0.42 +0.4 2,816,452 - ECD_02686 0.42 -1.2 2,816,452 - ECD_02686 0.42 -0.2 2,816,452 - ECD_02686 0.42 +0.2 2,816,452 - ECD_02686 0.42 -0.1 2,816,488 - ECD_02686 0.45 -0.0 2,816,519 - ECD_02686 0.48 -0.0 2,816,519 - ECD_02686 0.48 -0.3 2,816,526 - ECD_02686 0.48 +1.2 2,816,561 - ECD_02686 0.51 +0.0 2,816,561 - ECD_02686 0.51 +0.0 2,816,561 - ECD_02686 0.51 -1.6 2,816,590 - ECD_02686 0.53 -0.1 2,816,649 - ECD_02686 0.58 +0.8 2,816,649 - ECD_02686 0.58 +0.4 2,816,649 - ECD_02686 0.58 +0.3 2,816,649 - ECD_02686 0.58 +1.1 2,816,649 - ECD_02686 0.58 +0.6 2,816,649 - ECD_02686 0.58 -0.3 2,816,680 - ECD_02686 0.60 -0.3 2,816,680 - ECD_02686 0.60 -2.5 2,816,687 - ECD_02686 0.61 +1.0 2,816,729 - ECD_02686 0.64 +0.8 2,816,729 - ECD_02686 0.64 +0.1 2,816,729 - ECD_02686 0.64 +1.3 2,816,729 - ECD_02686 0.64 +0.1 2,816,807 - ECD_02686 0.70 +1.3 2,816,920 - ECD_02686 0.79 -0.4 2,816,920 - ECD_02686 0.79 +0.5 2,816,943 - ECD_02686 0.81 -0.7 2,816,943 - ECD_02686 0.81 -0.2 2,816,943 - ECD_02686 0.81 -0.5 2,816,943 - ECD_02686 0.81 +0.2 2,816,943 - ECD_02686 0.81 -1.1 2,816,943 - ECD_02686 0.81 +0.3 2,817,002 - ECD_02686 0.86 +0.7 2,817,002 - ECD_02686 0.86 -0.3 2,817,008 - ECD_02686 0.86 -0.7 2,817,008 - ECD_02686 0.86 -0.2 2,817,077 - -0.0 2,817,091 - +0.4 2,817,091 - +0.3 2,817,196 - -1.1 2,817,196 - +1.4 2,817,196 - +0.4 2,817,249 + +0.7 2,817,302 - +0.1 2,817,319 + +0.4 2,817,320 - +0.8 2,817,320 - +0.3 2,817,386 - +1.1 2,817,463 + ECD_02687 0.17 +0.9 2,817,464 - ECD_02687 0.17 -0.2 2,817,475 + ECD_02687 0.18 -0.5 2,817,476 - ECD_02687 0.18 -0.5 2,817,593 + ECD_02687 0.31 -1.2 2,817,593 + ECD_02687 0.31 +0.7 2,817,593 + ECD_02687 0.31 +0.3 2,817,594 - ECD_02687 0.31 +0.5 2,817,676 + ECD_02687 0.40 +0.1 2,817,676 + ECD_02687 0.40 -1.7 2,817,677 - ECD_02687 0.40 +1.6 2,817,680 + ECD_02687 0.40 -0.7 2,817,680 + ECD_02687 0.40 -1.0 2,817,680 + ECD_02687 0.40 +0.0 2,817,680 + ECD_02687 0.40 +0.0 2,817,681 - ECD_02687 0.40 -1.3 2,817,703 + ECD_02687 0.43 -0.1 2,817,704 - ECD_02687 0.43 +1.6 2,817,739 + ECD_02687 0.47 +0.4 2,817,762 - ECD_02687 0.49 +0.3 2,817,800 - ECD_02687 0.53 -0.1 2,817,800 - ECD_02687 0.53 +0.4 2,817,800 - ECD_02687 0.53 +0.3 2,817,850 + ECD_02687 0.58 -0.7 2,817,882 + ECD_02687 0.62 +0.9 2,817,882 + ECD_02687 0.62 +0.5 2,817,882 + ECD_02687 0.62 -0.7 2,817,882 + ECD_02687 0.62 -0.5 2,817,882 + ECD_02687 0.62 -0.6 2,817,882 + ECD_02687 0.62 -0.5 2,817,882 + ECD_02687 0.62 -0.7 2,817,883 - ECD_02687 0.62 +1.6 2,817,883 - ECD_02687 0.62 +0.3 2,817,883 - ECD_02687 0.62 +0.0 2,817,909 + ECD_02687 0.65 -0.7 2,817,931 + ECD_02687 0.67 -0.8 2,817,931 + ECD_02687 0.67 -0.2 2,817,932 - ECD_02687 0.67 -1.1 2,817,932 - ECD_02687 0.67 -0.1 2,817,932 - ECD_02687 0.67 +1.3 2,817,935 + ECD_02687 0.68 -0.8 2,817,935 + ECD_02687 0.68 +0.8 2,817,935 + ECD_02687 0.68 -1.8 2,817,935 + ECD_02687 0.68 +0.3 2,817,936 - ECD_02687 0.68 -1.0 2,817,967 + ECD_02687 0.71 -0.1 2,817,967 + ECD_02687 0.71 +0.4 2,818,019 + ECD_02687 0.76 -1.2 2,818,019 + ECD_02687 0.76 -0.9 2,818,048 + ECD_02687 0.80 +0.3 2,818,054 - ECD_02687 0.80 +0.1 2,818,054 - ECD_02687 0.80 -0.4 2,818,054 - ECD_02687 0.80 -2.1 2,818,089 - ECD_02687 0.84 +0.0 2,818,089 - ECD_02687 0.84 -1.2 2,818,160 + +0.8 2,818,171 + -0.9 2,818,171 + +0.3 2,818,171 + -0.1 2,818,171 + +1.5 2,818,172 - +0.6 2,818,172 - +2.3 2,818,172 - -0.5 2,818,211 + +0.3 2,818,211 + -1.7 2,818,212 - -0.3 2,818,226 + +0.5 2,818,236 + -0.2 2,818,237 - -0.5 2,818,237 - -1.3 2,818,237 - -0.5 2,818,237 - +0.0 2,818,237 - +1.1 2,818,386 - ECD_02688 0.23 +0.3 2,818,389 - ECD_02688 0.24 -0.6 2,818,408 - ECD_02688 0.26 -0.4 2,818,477 - ECD_02688 0.36 -0.1 2,818,538 + ECD_02688 0.45 +0.1 2,818,539 - ECD_02688 0.45 +0.2 2,818,539 - ECD_02688 0.45 +0.2 2,818,612 + ECD_02688 0.56 +0.7 2,818,613 - ECD_02688 0.56 +0.5 2,818,656 + ECD_02688 0.62 +0.8 2,818,657 - ECD_02688 0.62 -0.9 2,818,657 - ECD_02688 0.62 +0.7 2,818,666 - ECD_02688 0.64 +0.0 2,818,671 + ECD_02688 0.64 +0.3 2,818,672 - ECD_02688 0.65 -0.9 2,818,675 + ECD_02688 0.65 +0.0 2,818,675 + ECD_02688 0.65 -1.9 2,818,676 - ECD_02688 0.65 +0.3 2,818,676 - ECD_02688 0.65 +1.3 2,818,676 - ECD_02688 0.65 -0.1 2,818,676 - ECD_02688 0.65 +1.7 2,818,676 - ECD_02688 0.65 -0.4 2,818,676 - ECD_02688 0.65 -0.1 2,818,683 + ECD_02688 0.66 -2.1 2,818,683 + ECD_02688 0.66 -1.1 2,818,684 - ECD_02688 0.66 +0.9 2,818,684 - ECD_02688 0.66 +0.3 2,818,705 + ECD_02688 0.69 -0.6 2,818,743 + ECD_02688 0.75 +0.9 2,818,775 - ECD_02688 0.79 -0.2 2,818,775 - ECD_02688 0.79 -0.6 2,818,775 - ECD_02688 0.79 -0.5 2,818,775 - ECD_02688 0.79 -1.5 2,818,775 - ECD_02688 0.79 -0.6 2,818,794 + ECD_02688 0.82 +0.9 2,818,794 + ECD_02688 0.82 -1.0 2,818,798 + ECD_02688 0.83 +0.4 2,818,798 + ECD_02688 0.83 -1.1 2,818,798 + ECD_02688 0.83 -0.1 2,818,798 + ECD_02688 0.83 +0.2 2,818,799 - ECD_02688 0.83 +0.3 2,818,840 - ECD_02688 0.89 +0.5 2,818,853 - -0.6 2,818,853 - -1.0 2,818,853 - -0.7 2,818,862 + -0.3 2,818,862 + -0.5 2,818,865 + -0.4 2,818,999 + -0.5 2,819,000 - +1.5 2,819,000 - -0.3 2,819,023 + +0.3 2,819,023 + +1.1 2,819,023 + -0.2 2,819,024 - +0.0 2,819,024 - -0.2 2,819,024 - +0.1 2,819,096 + +1.1 2,819,097 - -0.1 2,819,097 - +0.7 2,819,173 + +0.7
Or see this region's nucleotide sequence