Strain Fitness in Escherichia coli BL21 around ECD_02494

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02493 and ECD_02494 are separated by 15 nucleotidesECD_02494 and ECD_02495 are separated by 75 nucleotidesECD_02495 and ECD_02496 are separated by 41 nucleotides ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123 _02493 ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621 _02494 ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044 _02495 ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853 _02496 Position (kb) 2610 2611Strain fitness (log2 ratio) -2 -1 0 1 2at 2609.177 kb on + strand, within ECD_02493at 2609.185 kb on - strand, within ECD_02493at 2609.185 kb on - strand, within ECD_02493at 2609.216 kb on - strand, within ECD_02493at 2609.239 kb on - strand, within ECD_02493at 2609.255 kb on + strand, within ECD_02493at 2609.325 kb on - strand, within ECD_02493at 2609.361 kb on + strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.395 kb on - strand, within ECD_02493at 2609.421 kb on + strand, within ECD_02493at 2609.422 kb on - strand, within ECD_02493at 2609.422 kb on - strand, within ECD_02493at 2609.484 kb on - strand, within ECD_02493at 2609.535 kb on + strand, within ECD_02493at 2609.633 kb on + strand, within ECD_02493at 2609.633 kb on + strand, within ECD_02493at 2609.645 kb on + strand, within ECD_02493at 2609.770 kb on + strand, within ECD_02493at 2609.770 kb on + strand, within ECD_02493at 2609.770 kb on + strand, within ECD_02493at 2609.771 kb on - strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.859 kb on + strand, within ECD_02493at 2609.860 kb on - strand, within ECD_02493at 2609.860 kb on - strand, within ECD_02493at 2609.860 kb on - strand, within ECD_02493at 2609.866 kb on + strand, within ECD_02493at 2609.902 kb on + strand, within ECD_02493at 2609.909 kb on + strand, within ECD_02493at 2609.910 kb on - strand, within ECD_02493at 2610.078 kb on + strandat 2610.078 kb on + strandat 2610.078 kb on + strandat 2610.078 kb on + strandat 2610.079 kb on - strandat 2610.079 kb on - strandat 2610.079 kb on - strandat 2610.121 kb on + strandat 2610.122 kb on - strandat 2610.131 kb on - strandat 2610.133 kb on - strandat 2610.179 kb on + strandat 2610.179 kb on + strandat 2610.255 kb on + strand, within ECD_02494at 2610.255 kb on + strand, within ECD_02494at 2610.319 kb on + strand, within ECD_02494at 2610.367 kb on - strand, within ECD_02494at 2610.417 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.449 kb on + strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.490 kb on - strand, within ECD_02494at 2610.490 kb on - strand, within ECD_02494at 2610.610 kb on - strandat 2610.610 kb on - strandat 2610.638 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
2,609,177 + ECD_02493 0.23 -0.8
2,609,185 - ECD_02493 0.23 -0.2
2,609,185 - ECD_02493 0.23 +0.2
2,609,216 - ECD_02493 0.26 +1.8
2,609,239 - ECD_02493 0.28 -0.5
2,609,255 + ECD_02493 0.29 +0.2
2,609,325 - ECD_02493 0.35 -0.4
2,609,361 + ECD_02493 0.38 +0.0
2,609,395 - ECD_02493 0.41 -0.1
2,609,395 - ECD_02493 0.41 +0.7
2,609,395 - ECD_02493 0.41 +0.8
2,609,395 - ECD_02493 0.41 -0.8
2,609,421 + ECD_02493 0.43 +0.2
2,609,422 - ECD_02493 0.43 -0.8
2,609,422 - ECD_02493 0.43 +0.2
2,609,484 - ECD_02493 0.48 -1.4
2,609,535 + ECD_02493 0.52 +0.6
2,609,633 + ECD_02493 0.60 -0.3
2,609,633 + ECD_02493 0.60 -0.8
2,609,645 + ECD_02493 0.61 +0.3
2,609,770 + ECD_02493 0.71 +0.6
2,609,770 + ECD_02493 0.71 -0.0
2,609,770 + ECD_02493 0.71 -0.2
2,609,771 - ECD_02493 0.71 +1.0
2,609,859 + ECD_02493 0.78 +1.1
2,609,859 + ECD_02493 0.78 +0.1
2,609,859 + ECD_02493 0.78 -0.5
2,609,859 + ECD_02493 0.78 -0.1
2,609,859 + ECD_02493 0.78 +0.2
2,609,860 - ECD_02493 0.78 +1.2
2,609,860 - ECD_02493 0.78 -1.0
2,609,860 - ECD_02493 0.78 +0.7
2,609,866 + ECD_02493 0.79 +1.0
2,609,902 + ECD_02493 0.82 +2.1
2,609,909 + ECD_02493 0.82 -0.2
2,609,910 - ECD_02493 0.83 +0.6
2,610,078 + +1.2
2,610,078 + -1.6
2,610,078 + -0.7
2,610,078 + -0.2
2,610,079 - -0.0
2,610,079 - -0.2
2,610,079 - +0.2
2,610,121 + +0.8
2,610,122 - -0.2
2,610,131 - +0.6
2,610,133 - -0.8
2,610,179 + +2.1
2,610,179 + +0.1
2,610,255 + ECD_02494 0.24 -0.6
2,610,255 + ECD_02494 0.24 +0.1
2,610,319 + ECD_02494 0.37 -0.3
2,610,367 - ECD_02494 0.47 +0.5
2,610,417 + ECD_02494 0.58 +0.2
2,610,421 + ECD_02494 0.58 -1.8
2,610,421 + ECD_02494 0.58 +1.1
2,610,421 + ECD_02494 0.58 +0.1
2,610,421 + ECD_02494 0.58 -1.0
2,610,421 + ECD_02494 0.58 -0.4
2,610,421 + ECD_02494 0.58 +0.9
2,610,422 - ECD_02494 0.59 -1.8
2,610,422 - ECD_02494 0.59 -0.5
2,610,422 - ECD_02494 0.59 +1.2
2,610,422 - ECD_02494 0.59 +0.5
2,610,422 - ECD_02494 0.59 +0.6
2,610,436 + ECD_02494 0.61 +0.9
2,610,436 + ECD_02494 0.61 +1.8
2,610,436 + ECD_02494 0.61 +0.4
2,610,436 + ECD_02494 0.61 +1.2
2,610,449 + ECD_02494 0.64 -0.0
2,610,450 - ECD_02494 0.64 +2.0
2,610,450 - ECD_02494 0.64 -1.0
2,610,450 - ECD_02494 0.64 +0.4
2,610,490 - ECD_02494 0.73 +1.2
2,610,490 - ECD_02494 0.73 -0.1
2,610,610 - +0.6
2,610,610 - -0.8
2,610,638 + -0.4

Or see this region's nucleotide sequence