Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02145 and ECD_02146 are separated by 166 nucleotides ECD_02146 and ECD_02147 overlap by 4 nucleotides
ECD_02145: ECD_02145 - hybrid sensory kinase in two-component regulatory system with RcsB and YojN, at 2,207,388 to 2,210,237
_02145
ECD_02146: ECD_02146 - sensory histidine kinase in two-component regulatory system with AtoC, at 2,210,404 to 2,212,230
_02146
ECD_02147: ECD_02147 - fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein, at 2,212,227 to 2,213,612
_02147
Position (kb)
2210
2211
2212
2213 Strain fitness (log2 ratio)
-1
0
1
2 at 2209.701 kb on - strand, within ECD_02145 at 2210.014 kb on + strand at 2210.192 kb on - strand at 2210.192 kb on - strand at 2210.378 kb on - strand at 2210.411 kb on - strand at 2210.490 kb on + strand at 2210.493 kb on + strand at 2210.507 kb on + strand at 2210.713 kb on + strand, within ECD_02146 at 2210.759 kb on + strand, within ECD_02146 at 2210.826 kb on + strand, within ECD_02146 at 2211.154 kb on - strand, within ECD_02146 at 2211.192 kb on + strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.342 kb on + strand, within ECD_02146 at 2211.602 kb on + strand, within ECD_02146 at 2211.607 kb on - strand, within ECD_02146 at 2211.669 kb on - strand, within ECD_02146 at 2211.669 kb on - strand, within ECD_02146 at 2211.852 kb on - strand, within ECD_02146 at 2211.914 kb on + strand, within ECD_02146 at 2211.985 kb on + strand, within ECD_02146 at 2212.227 kb on - strand at 2212.236 kb on - strand at 2212.348 kb on + strand at 2212.479 kb on + strand, within ECD_02147 at 2212.480 kb on - strand, within ECD_02147 at 2212.531 kb on - strand, within ECD_02147 at 2212.536 kb on - strand, within ECD_02147 at 2212.996 kb on + strand, within ECD_02147 at 2213.104 kb on + strand, within ECD_02147 at 2213.158 kb on + strand, within ECD_02147 at 2213.193 kb on - strand, within ECD_02147
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,209,701 - ECD_02145 0.81 -1.5 2,210,014 + +1.1 2,210,192 - -0.0 2,210,192 - +0.6 2,210,378 - +0.6 2,210,411 - -0.1 2,210,490 + +0.5 2,210,493 + -0.1 2,210,507 + -0.1 2,210,713 + ECD_02146 0.17 +1.5 2,210,759 + ECD_02146 0.19 -0.3 2,210,826 + ECD_02146 0.23 +0.5 2,211,154 - ECD_02146 0.41 -0.6 2,211,192 + ECD_02146 0.43 +0.2 2,211,255 - ECD_02146 0.47 -0.6 2,211,255 - ECD_02146 0.47 +1.0 2,211,255 - ECD_02146 0.47 +0.5 2,211,342 + ECD_02146 0.51 -0.3 2,211,602 + ECD_02146 0.66 +0.1 2,211,607 - ECD_02146 0.66 -0.2 2,211,669 - ECD_02146 0.69 +0.4 2,211,669 - ECD_02146 0.69 -0.0 2,211,852 - ECD_02146 0.79 -0.1 2,211,914 + ECD_02146 0.83 +2.1 2,211,985 + ECD_02146 0.87 +0.6 2,212,227 - +0.7 2,212,236 - -0.2 2,212,348 + -0.5 2,212,479 + ECD_02147 0.18 +0.2 2,212,480 - ECD_02147 0.18 +1.4 2,212,531 - ECD_02147 0.22 -0.2 2,212,536 - ECD_02147 0.22 -0.6 2,212,996 + ECD_02147 0.55 +1.1 2,213,104 + ECD_02147 0.63 -0.2 2,213,158 + ECD_02147 0.67 +0.9 2,213,193 - ECD_02147 0.70 +0.4
Or see this region's nucleotide sequence