Strain Fitness in Escherichia coli BL21 around ECD_02138

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02137 and ECD_02138 are separated by 217 nucleotidesECD_02138 and ECD_02139 are separated by 75 nucleotidesECD_02139 and ECD_02140 overlap by 1 nucleotides ECD_02137: ECD_02137 - malate dehydrogenase, FAD/NAD(P)-binding domain, at 2,198,873 to 2,200,519 _02137 ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380 _02138 ECD_02139: ECD_02139 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, at 2,202,456 to 2,203,106 _02139 ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170 _02140 Position (kb) 2200 2201 2202 2203Strain fitness (log2 ratio) -1 0 1 2at 2199.806 kb on - strand, within ECD_02137at 2199.851 kb on - strand, within ECD_02137at 2199.876 kb on - strand, within ECD_02137at 2200.099 kb on + strand, within ECD_02137at 2200.100 kb on - strand, within ECD_02137at 2200.100 kb on - strand, within ECD_02137at 2200.112 kb on - strand, within ECD_02137at 2200.118 kb on - strand, within ECD_02137at 2200.133 kb on - strand, within ECD_02137at 2200.374 kb on + strandat 2200.375 kb on - strandat 2200.419 kb on - strandat 2200.474 kb on + strandat 2200.474 kb on + strandat 2200.475 kb on - strandat 2200.732 kb on + strandat 2200.735 kb on + strandat 2200.739 kb on - strandat 2200.739 kb on - strandat 2200.875 kb on - strandat 2201.072 kb on + strand, within ECD_02138at 2201.073 kb on - strand, within ECD_02138at 2201.263 kb on + strand, within ECD_02138at 2201.264 kb on - strand, within ECD_02138at 2201.553 kb on - strand, within ECD_02138at 2201.682 kb on - strand, within ECD_02138at 2201.709 kb on - strand, within ECD_02138at 2201.709 kb on - strand, within ECD_02138at 2201.741 kb on - strand, within ECD_02138at 2201.741 kb on - strand, within ECD_02138at 2201.741 kb on - strand, within ECD_02138at 2201.759 kb on - strand, within ECD_02138at 2201.859 kb on - strand, within ECD_02138at 2201.867 kb on - strand, within ECD_02138at 2201.959 kb on + strand, within ECD_02138at 2202.030 kb on - strand, within ECD_02138at 2202.208 kb on - strand, within ECD_02138at 2202.208 kb on - strand, within ECD_02138at 2202.367 kb on - strandat 2202.657 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.996 kb on - strand, within ECD_02139at 2203.214 kb on + strand, within ECD_02140at 2203.215 kb on - strand, within ECD_02140at 2203.215 kb on - strand, within ECD_02140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
2,199,806 - ECD_02137 0.57 +0.5
2,199,851 - ECD_02137 0.59 +1.1
2,199,876 - ECD_02137 0.61 +0.2
2,200,099 + ECD_02137 0.74 +0.8
2,200,100 - ECD_02137 0.74 +0.4
2,200,100 - ECD_02137 0.74 +0.9
2,200,112 - ECD_02137 0.75 +0.2
2,200,118 - ECD_02137 0.76 -0.4
2,200,133 - ECD_02137 0.77 +0.7
2,200,374 + +0.5
2,200,375 - +0.9
2,200,419 - -0.1
2,200,474 + +0.8
2,200,474 + -1.1
2,200,475 - -0.8
2,200,732 + -1.3
2,200,735 + +0.9
2,200,739 - -1.5
2,200,739 - -0.3
2,200,875 - +0.8
2,201,072 + ECD_02138 0.20 +0.7
2,201,073 - ECD_02138 0.20 -0.4
2,201,263 + ECD_02138 0.32 -0.3
2,201,264 - ECD_02138 0.32 +0.1
2,201,553 - ECD_02138 0.50 +0.1
2,201,682 - ECD_02138 0.57 +0.4
2,201,709 - ECD_02138 0.59 -1.0
2,201,709 - ECD_02138 0.59 +0.3
2,201,741 - ECD_02138 0.61 -1.6
2,201,741 - ECD_02138 0.61 +0.3
2,201,741 - ECD_02138 0.61 -0.2
2,201,759 - ECD_02138 0.62 +0.1
2,201,859 - ECD_02138 0.68 +0.2
2,201,867 - ECD_02138 0.69 -0.2
2,201,959 + ECD_02138 0.74 +2.1
2,202,030 - ECD_02138 0.79 -0.5
2,202,208 - ECD_02138 0.89 +1.4
2,202,208 - ECD_02138 0.89 -0.9
2,202,367 - -0.6
2,202,657 + ECD_02139 0.31 -0.6
2,202,941 + ECD_02139 0.75 -1.6
2,202,941 + ECD_02139 0.75 -0.3
2,202,941 + ECD_02139 0.75 -0.5
2,202,941 + ECD_02139 0.75 -0.4
2,202,942 - ECD_02139 0.75 +0.1
2,202,942 - ECD_02139 0.75 -0.9
2,202,942 - ECD_02139 0.75 +0.5
2,202,942 - ECD_02139 0.75 -0.6
2,202,942 - ECD_02139 0.75 -0.6
2,202,942 - ECD_02139 0.75 -0.5
2,202,942 - ECD_02139 0.75 +0.4
2,202,942 - ECD_02139 0.75 -0.8
2,202,942 - ECD_02139 0.75 +0.4
2,202,942 - ECD_02139 0.75 -0.1
2,202,942 - ECD_02139 0.75 -0.9
2,202,942 - ECD_02139 0.75 -0.3
2,202,996 - ECD_02139 0.83 -0.9
2,203,214 + ECD_02140 0.10 +0.8
2,203,215 - ECD_02140 0.10 -0.1
2,203,215 - ECD_02140 0.10 -0.4

Or see this region's nucleotide sequence