Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00945 and ECD_00946 are separated by 11 nucleotides ECD_00946 and ECD_00947 are separated by 7 nucleotides ECD_00947 and ECD_00948 overlap by 8 nucleotides ECD_00948 and ECD_00949 are separated by 110 nucleotides
ECD_00945: ECD_00945 - putative fimbrial-like adhesin protein, at 1,006,896 to 1,007,966
_00945
ECD_00946: ECD_00946 - putative fimbriae protein, at 1,007,978 to 1,008,520
_00946
ECD_00947: ECD_00947 - putative fimbrial-like adhesin protein, at 1,008,528 to 1,009,043
_00947
ECD_00948: ECD_00948 - putative periplasmic pilin chaperone, at 1,009,036 to 1,009,746
_00948
ECD_00949: ECD_00949 - dihydro-orotate oxidase, FMN-linked, at 1,009,857 to 1,010,867
_00949
Position (kb) 1008
1009
1010 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1007.626 kb on + strand, within ECD_00945 at 1007.759 kb on + strand, within ECD_00945 at 1007.814 kb on - strand, within ECD_00945 at 1007.814 kb on - strand, within ECD_00945 at 1007.909 kb on - strand at 1008.073 kb on + strand, within ECD_00946 at 1008.297 kb on + strand, within ECD_00946 at 1008.448 kb on + strand, within ECD_00946 at 1008.448 kb on + strand, within ECD_00946 at 1008.586 kb on + strand, within ECD_00947 at 1008.635 kb on + strand, within ECD_00947 at 1008.635 kb on + strand, within ECD_00947 at 1008.932 kb on - strand, within ECD_00947 at 1009.044 kb on + strand at 1009.209 kb on + strand, within ECD_00948 at 1009.293 kb on + strand, within ECD_00948 at 1009.505 kb on - strand, within ECD_00948 at 1009.541 kb on + strand, within ECD_00948 at 1009.592 kb on + strand, within ECD_00948
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,007,626 + ECD_00945 0.68 -0.3 1,007,759 + ECD_00945 0.81 -0.3 1,007,814 - ECD_00945 0.86 +2.1 1,007,814 - ECD_00945 0.86 +0.1 1,007,909 - -0.5 1,008,073 + ECD_00946 0.17 +0.3 1,008,297 + ECD_00946 0.59 +0.2 1,008,448 + ECD_00946 0.87 +0.9 1,008,448 + ECD_00946 0.87 -0.6 1,008,586 + ECD_00947 0.11 -0.9 1,008,635 + ECD_00947 0.21 -2.2 1,008,635 + ECD_00947 0.21 -0.6 1,008,932 - ECD_00947 0.78 -0.8 1,009,044 + +1.2 1,009,209 + ECD_00948 0.24 +0.6 1,009,293 + ECD_00948 0.36 +0.1 1,009,505 - ECD_00948 0.66 -2.0 1,009,541 + ECD_00948 0.71 -1.2 1,009,592 + ECD_00948 0.78 -0.7
Or see this region's nucleotide sequence