Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00787 and ECD_00788 are separated by 167 nucleotides ECD_00788 and ECD_00789 are separated by 151 nucleotides
ECD_00787: ECD_00787 - ABC-F family putative regulatory ATPase, at 839,955 to 841,547
_00787
ECD_00788: ECD_00788 - DUF1479 family protein, at 841,715 to 842,980
_00788
ECD_00789: ECD_00789 - sugar phosphatase; fructose-1-P/ribose-5-P/glucose-6-P phosphatase, at 843,132 to 843,947
_00789
Position (kb) 841
842
843 Strain fitness (log2 ratio) -1
0
1 at 840.890 kb on + strand, within ECD_00787 at 840.890 kb on + strand, within ECD_00787 at 841.081 kb on + strand, within ECD_00787 at 841.113 kb on + strand, within ECD_00787 at 841.113 kb on + strand, within ECD_00787 at 841.113 kb on + strand, within ECD_00787 at 841.131 kb on + strand, within ECD_00787 at 841.529 kb on + strand at 841.545 kb on + strand at 841.685 kb on - strand at 842.111 kb on + strand, within ECD_00788 at 842.112 kb on - strand, within ECD_00788 at 842.117 kb on + strand, within ECD_00788 at 842.122 kb on - strand, within ECD_00788 at 842.245 kb on - strand, within ECD_00788 at 842.287 kb on - strand, within ECD_00788 at 842.609 kb on - strand, within ECD_00788 at 842.655 kb on + strand, within ECD_00788 at 842.656 kb on - strand, within ECD_00788 at 842.682 kb on - strand, within ECD_00788 at 842.759 kb on - strand, within ECD_00788 at 842.972 kb on - strand at 843.362 kb on + strand, within ECD_00789 at 843.374 kb on + strand, within ECD_00789 at 843.379 kb on - strand, within ECD_00789 at 843.389 kb on + strand, within ECD_00789 at 843.390 kb on - strand, within ECD_00789 at 843.514 kb on - strand, within ECD_00789 at 843.610 kb on + strand, within ECD_00789 at 843.610 kb on + strand, within ECD_00789 at 843.611 kb on - strand, within ECD_00789 at 843.657 kb on + strand, within ECD_00789 at 843.794 kb on + strand, within ECD_00789 at 843.802 kb on + strand, within ECD_00789 at 843.805 kb on + strand, within ECD_00789 at 843.833 kb on + strand, within ECD_00789 at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 840,890 + ECD_00787 0.59 -0.7 840,890 + ECD_00787 0.59 +0.5 841,081 + ECD_00787 0.71 -0.6 841,113 + ECD_00787 0.73 +0.5 841,113 + ECD_00787 0.73 -0.6 841,113 + ECD_00787 0.73 -0.0 841,131 + ECD_00787 0.74 -1.3 841,529 + +0.3 841,545 + -0.1 841,685 - +0.1 842,111 + ECD_00788 0.31 -0.3 842,112 - ECD_00788 0.31 +0.5 842,117 + ECD_00788 0.32 -0.4 842,122 - ECD_00788 0.32 -0.2 842,245 - ECD_00788 0.42 -0.5 842,287 - ECD_00788 0.45 -0.7 842,609 - ECD_00788 0.71 +0.2 842,655 + ECD_00788 0.74 -0.3 842,656 - ECD_00788 0.74 -1.0 842,682 - ECD_00788 0.76 -0.1 842,759 - ECD_00788 0.82 +0.6 842,972 - +0.1 843,362 + ECD_00789 0.28 -0.6 843,374 + ECD_00789 0.30 +1.5 843,379 - ECD_00789 0.30 -1.4 843,389 + ECD_00789 0.31 -1.1 843,390 - ECD_00789 0.32 +0.1 843,514 - ECD_00789 0.47 -0.3 843,610 + ECD_00789 0.59 -0.0 843,610 + ECD_00789 0.59 +0.1 843,611 - ECD_00789 0.59 -0.1 843,657 + ECD_00789 0.64 -0.3 843,794 + ECD_00789 0.81 +0.7 843,802 + ECD_00789 0.82 -1.1 843,805 + ECD_00789 0.82 +0.9 843,833 + ECD_00789 0.86 -0.0 843,947 + +0.7 843,947 + +0.3 843,947 + +0.2 843,947 + +1.0 843,948 - -0.1
Or see this region's nucleotide sequence