Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24620 and LU632_RS24625 overlap by 23 nucleotides LU632_RS24625 and LU632_RS24630 are separated by 260 nucleotides LU632_RS24630 and LU632_RS24635 are separated by 154 nucleotides LU632_RS24635 and LU632_RS24640 overlap by 4 nucleotides
LU632_RS24620: LU632_RS24620 - transposase, at 4,691,884 to 4,692,450
_RS24620
LU632_RS24625: LU632_RS24625 - hypothetical protein, at 4,692,428 to 4,692,643
_RS24625
LU632_RS24630: LU632_RS24630 - transposase, at 4,692,904 to 4,693,653
_RS24630
LU632_RS24635: LU632_RS24635 - hypothetical protein, at 4,693,808 to 4,694,242
_RS24635
LU632_RS24640: LU632_RS24640 - hypothetical protein, at 4,694,239 to 4,694,943
_RS24640
Position (kb) 4692
4693
4694 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4692.851 kb on + strand at 4692.867 kb on + strand at 4692.868 kb on - strand at 4692.869 kb on + strand at 4692.870 kb on - strand at 4692.870 kb on - strand at 4693.214 kb on + strand, within LU632_RS24630 at 4693.215 kb on - strand, within LU632_RS24630 at 4693.220 kb on - strand, within LU632_RS24630 at 4693.237 kb on - strand, within LU632_RS24630 at 4693.301 kb on - strand, within LU632_RS24630 at 4693.301 kb on - strand, within LU632_RS24630 at 4693.445 kb on + strand, within LU632_RS24630 at 4693.445 kb on + strand, within LU632_RS24630 at 4693.564 kb on - strand, within LU632_RS24630 at 4693.702 kb on - strand at 4693.736 kb on + strand at 4693.737 kb on - strand at 4693.740 kb on - strand at 4693.821 kb on + strand at 4693.875 kb on - strand, within LU632_RS24635 at 4693.891 kb on + strand, within LU632_RS24635 at 4693.946 kb on - strand, within LU632_RS24635 at 4693.946 kb on - strand, within LU632_RS24635 at 4693.948 kb on - strand, within LU632_RS24635 at 4693.961 kb on + strand, within LU632_RS24635 at 4693.961 kb on + strand, within LU632_RS24635 at 4693.962 kb on - strand, within LU632_RS24635 at 4693.962 kb on - strand, within LU632_RS24635 at 4693.994 kb on - strand, within LU632_RS24635 at 4694.020 kb on + strand, within LU632_RS24635 at 4694.136 kb on + strand, within LU632_RS24635 at 4694.137 kb on - strand, within LU632_RS24635 at 4694.137 kb on - strand, within LU632_RS24635 at 4694.139 kb on + strand, within LU632_RS24635 at 4694.140 kb on - strand, within LU632_RS24635 at 4694.169 kb on + strand, within LU632_RS24635 at 4694.170 kb on - strand, within LU632_RS24635 at 4694.216 kb on + strand at 4694.217 kb on - strand at 4694.217 kb on - strand at 4694.273 kb on - strand at 4694.338 kb on + strand, within LU632_RS24640 at 4694.339 kb on - strand, within LU632_RS24640 at 4694.371 kb on - strand, within LU632_RS24640 at 4694.427 kb on + strand, within LU632_RS24640 at 4694.457 kb on - strand, within LU632_RS24640 at 4694.459 kb on + strand, within LU632_RS24640 at 4694.640 kb on + strand, within LU632_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 4,692,851 + -0.0 4,692,867 + +0.5 4,692,868 - +0.5 4,692,869 + -0.3 4,692,870 - -0.4 4,692,870 - -0.6 4,693,214 + LU632_RS24630 0.41 -0.2 4,693,215 - LU632_RS24630 0.41 -0.9 4,693,220 - LU632_RS24630 0.42 +1.7 4,693,237 - LU632_RS24630 0.44 +0.2 4,693,301 - LU632_RS24630 0.53 +0.6 4,693,301 - LU632_RS24630 0.53 +0.5 4,693,445 + LU632_RS24630 0.72 -0.1 4,693,445 + LU632_RS24630 0.72 -2.4 4,693,564 - LU632_RS24630 0.88 +1.3 4,693,702 - +1.8 4,693,736 + +0.2 4,693,737 - -0.5 4,693,740 - -0.5 4,693,821 + -0.4 4,693,875 - LU632_RS24635 0.15 +0.1 4,693,891 + LU632_RS24635 0.19 +0.4 4,693,946 - LU632_RS24635 0.32 +0.6 4,693,946 - LU632_RS24635 0.32 -1.5 4,693,948 - LU632_RS24635 0.32 +0.5 4,693,961 + LU632_RS24635 0.35 +0.6 4,693,961 + LU632_RS24635 0.35 +0.5 4,693,962 - LU632_RS24635 0.35 +0.6 4,693,962 - LU632_RS24635 0.35 -0.4 4,693,994 - LU632_RS24635 0.43 -1.0 4,694,020 + LU632_RS24635 0.49 +0.1 4,694,136 + LU632_RS24635 0.75 -0.9 4,694,137 - LU632_RS24635 0.76 -0.8 4,694,137 - LU632_RS24635 0.76 -0.4 4,694,139 + LU632_RS24635 0.76 +2.2 4,694,140 - LU632_RS24635 0.76 +0.9 4,694,169 + LU632_RS24635 0.83 +0.2 4,694,170 - LU632_RS24635 0.83 -0.5 4,694,216 + +2.0 4,694,217 - -0.5 4,694,217 - -0.5 4,694,273 - +0.5 4,694,338 + LU632_RS24640 0.14 +1.6 4,694,339 - LU632_RS24640 0.14 +0.1 4,694,371 - LU632_RS24640 0.19 -1.6 4,694,427 + LU632_RS24640 0.27 +2.1 4,694,457 - LU632_RS24640 0.31 +0.0 4,694,459 + LU632_RS24640 0.31 +0.1 4,694,640 + LU632_RS24640 0.57 -0.5
Or see this region's nucleotide sequence