Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24215 and wzxE overlap by 4 nucleotides wzxE and rffA are separated by 1 nucleotides
LU632_RS24215: LU632_RS24215 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 4,617,796 to 4,618,863
_RS24215
LU632_RS24220: wzxE - lipid III flippase WzxE, at 4,618,860 to 4,620,110
wzxE
LU632_RS24225: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,620,112 to 4,621,242
rffA
Position (kb) 4618
4619
4620
4621 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4617.947 kb on - strand, within LU632_RS24215 at 4618.103 kb on - strand, within LU632_RS24215 at 4618.103 kb on - strand, within LU632_RS24215 at 4618.160 kb on - strand, within LU632_RS24215 at 4618.191 kb on + strand, within LU632_RS24215 at 4618.191 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.194 kb on - strand, within LU632_RS24215 at 4618.194 kb on - strand, within LU632_RS24215 at 4618.282 kb on - strand, within LU632_RS24215 at 4618.369 kb on - strand, within LU632_RS24215 at 4618.387 kb on + strand, within LU632_RS24215 at 4618.487 kb on - strand, within LU632_RS24215 at 4618.491 kb on - strand, within LU632_RS24215 at 4618.608 kb on + strand, within LU632_RS24215 at 4618.818 kb on + strand at 4618.864 kb on - strand at 4618.864 kb on - strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.918 kb on + strand at 4618.919 kb on + strand at 4618.919 kb on - strand at 4618.930 kb on + strand at 4618.930 kb on + strand at 4618.931 kb on - strand at 4618.931 kb on - strand at 4618.931 kb on - strand at 4619.024 kb on - strand, within wzxE at 4619.024 kb on - strand, within wzxE at 4619.068 kb on + strand, within wzxE at 4619.077 kb on - strand, within wzxE at 4619.307 kb on - strand, within wzxE at 4619.309 kb on + strand, within wzxE at 4619.310 kb on - strand, within wzxE at 4619.334 kb on - strand, within wzxE at 4619.433 kb on - strand, within wzxE at 4619.534 kb on + strand, within wzxE at 4619.695 kb on - strand, within wzxE at 4619.695 kb on - strand, within wzxE at 4619.750 kb on + strand, within wzxE at 4619.750 kb on + strand, within wzxE at 4619.792 kb on + strand, within wzxE at 4619.853 kb on + strand, within wzxE at 4619.853 kb on + strand, within wzxE at 4619.883 kb on + strand, within wzxE at 4619.918 kb on - strand, within wzxE at 4619.918 kb on - strand, within wzxE at 4619.974 kb on - strand, within wzxE at 4620.174 kb on - strand at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.322 kb on - strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.412 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.453 kb on - strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.545 kb on + strand, within rffA at 4620.546 kb on - strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.576 kb on + strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.696 kb on - strand, within rffA at 4620.761 kb on + strand, within rffA at 4620.809 kb on + strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.902 kb on - strand, within rffA at 4620.976 kb on + strand, within rffA at 4620.976 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.007 kb on + strand, within rffA at 4621.008 kb on - strand, within rffA at 4621.102 kb on - strand, within rffA
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 4,617,947 - LU632_RS24215 0.14 -1.5 4,618,103 - LU632_RS24215 0.29 -0.4 4,618,103 - LU632_RS24215 0.29 +0.1 4,618,160 - LU632_RS24215 0.34 +0.7 4,618,191 + LU632_RS24215 0.37 -1.0 4,618,191 + LU632_RS24215 0.37 -0.4 4,618,193 + LU632_RS24215 0.37 -0.8 4,618,193 + LU632_RS24215 0.37 -0.8 4,618,193 + LU632_RS24215 0.37 +0.1 4,618,194 - LU632_RS24215 0.37 -1.8 4,618,194 - LU632_RS24215 0.37 -0.3 4,618,282 - LU632_RS24215 0.46 +0.1 4,618,369 - LU632_RS24215 0.54 +0.4 4,618,387 + LU632_RS24215 0.55 +0.7 4,618,487 - LU632_RS24215 0.65 -0.8 4,618,491 - LU632_RS24215 0.65 -0.1 4,618,608 + LU632_RS24215 0.76 -1.7 4,618,818 + -1.1 4,618,864 - -0.3 4,618,864 - -1.3 4,618,918 + -1.1 4,618,918 + +0.2 4,618,918 + -0.0 4,618,918 + +0.2 4,618,918 + -0.9 4,618,919 + +2.0 4,618,919 - +0.9 4,618,930 + -0.9 4,618,930 + +0.2 4,618,931 - +0.0 4,618,931 - +0.5 4,618,931 - -0.0 4,619,024 - wzxE LU632_RS24220 0.13 +0.1 4,619,024 - wzxE LU632_RS24220 0.13 +1.1 4,619,068 + wzxE LU632_RS24220 0.17 +0.2 4,619,077 - wzxE LU632_RS24220 0.17 -1.5 4,619,307 - wzxE LU632_RS24220 0.36 +1.3 4,619,309 + wzxE LU632_RS24220 0.36 +1.1 4,619,310 - wzxE LU632_RS24220 0.36 -1.3 4,619,334 - wzxE LU632_RS24220 0.38 +0.2 4,619,433 - wzxE LU632_RS24220 0.46 +1.1 4,619,534 + wzxE LU632_RS24220 0.54 +0.1 4,619,695 - wzxE LU632_RS24220 0.67 -0.2 4,619,695 - wzxE LU632_RS24220 0.67 -0.8 4,619,750 + wzxE LU632_RS24220 0.71 +1.5 4,619,750 + wzxE LU632_RS24220 0.71 +0.0 4,619,792 + wzxE LU632_RS24220 0.75 +0.5 4,619,853 + wzxE LU632_RS24220 0.79 +1.2 4,619,853 + wzxE LU632_RS24220 0.79 -0.1 4,619,883 + wzxE LU632_RS24220 0.82 -1.5 4,619,918 - wzxE LU632_RS24220 0.85 -0.8 4,619,918 - wzxE LU632_RS24220 0.85 -0.9 4,619,974 - wzxE LU632_RS24220 0.89 -0.5 4,620,174 - -0.7 4,620,281 + rffA LU632_RS24225 0.15 +1.0 4,620,281 + rffA LU632_RS24225 0.15 +0.1 4,620,281 + rffA LU632_RS24225 0.15 +0.5 4,620,281 + rffA LU632_RS24225 0.15 +0.0 4,620,282 - rffA LU632_RS24225 0.15 -1.7 4,620,282 - rffA LU632_RS24225 0.15 -2.2 4,620,282 - rffA LU632_RS24225 0.15 -0.8 4,620,322 - rffA LU632_RS24225 0.19 -0.7 4,620,369 + rffA LU632_RS24225 0.23 +1.5 4,620,369 + rffA LU632_RS24225 0.23 -0.3 4,620,370 - rffA LU632_RS24225 0.23 -0.7 4,620,370 - rffA LU632_RS24225 0.23 +0.1 4,620,370 - rffA LU632_RS24225 0.23 -0.9 4,620,370 - rffA LU632_RS24225 0.23 +0.9 4,620,412 + rffA LU632_RS24225 0.27 -1.5 4,620,452 + rffA LU632_RS24225 0.30 +1.3 4,620,452 + rffA LU632_RS24225 0.30 +1.0 4,620,453 - rffA LU632_RS24225 0.30 +0.9 4,620,518 + rffA LU632_RS24225 0.36 -1.1 4,620,518 + rffA LU632_RS24225 0.36 -1.3 4,620,545 + rffA LU632_RS24225 0.38 -0.2 4,620,546 - rffA LU632_RS24225 0.38 -1.5 4,620,572 + rffA LU632_RS24225 0.41 -0.1 4,620,572 + rffA LU632_RS24225 0.41 +0.7 4,620,572 + rffA LU632_RS24225 0.41 +1.1 4,620,573 - rffA LU632_RS24225 0.41 +0.2 4,620,573 - rffA LU632_RS24225 0.41 -1.7 4,620,576 + rffA LU632_RS24225 0.41 -0.4 4,620,577 - rffA LU632_RS24225 0.41 +1.5 4,620,577 - rffA LU632_RS24225 0.41 -0.2 4,620,693 + rffA LU632_RS24225 0.51 +0.5 4,620,693 + rffA LU632_RS24225 0.51 +1.5 4,620,696 - rffA LU632_RS24225 0.52 -0.1 4,620,761 + rffA LU632_RS24225 0.57 -0.5 4,620,809 + rffA LU632_RS24225 0.62 +0.1 4,620,810 - rffA LU632_RS24225 0.62 +0.1 4,620,810 - rffA LU632_RS24225 0.62 -1.5 4,620,902 - rffA LU632_RS24225 0.70 -0.5 4,620,976 + rffA LU632_RS24225 0.76 +0.7 4,620,976 + rffA LU632_RS24225 0.76 +1.5 4,621,005 + rffA LU632_RS24225 0.79 +0.4 4,621,005 + rffA LU632_RS24225 0.79 -1.0 4,621,007 + rffA LU632_RS24225 0.79 -0.3 4,621,008 - rffA LU632_RS24225 0.79 +0.1 4,621,102 - rffA LU632_RS24225 0.88 -2.0
Or see this region's nucleotide sequence