Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24100

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
4,595,639	+	recQ	LU632_RS24095	0.59	+0.4
4,595,640	-	recQ	LU632_RS24095	0.59	+1.7
4,595,661	+	recQ	LU632_RS24095	0.60	+0.9
4,595,662	-	recQ	LU632_RS24095	0.60	+1.1
4,595,665	+	recQ	LU632_RS24095	0.60	-0.1
4,595,665	+	recQ	LU632_RS24095	0.60	-1.9
4,595,697	+	recQ	LU632_RS24095	0.62	+0.5
4,595,698	-	recQ	LU632_RS24095	0.62	+0.4
4,595,698	-	recQ	LU632_RS24095	0.62	+0.3
4,595,812	+	recQ	LU632_RS24095	0.69	+1.7
4,595,813	-	recQ	LU632_RS24095	0.69	-0.1
4,595,883	-	recQ	LU632_RS24095	0.72	-1.3
4,595,883	-	recQ	LU632_RS24095	0.72	-2.2
4,596,008	+	recQ	LU632_RS24095	0.79	-0.5
4,596,027	+	recQ	LU632_RS24095	0.80	-0.8
4,596,027	+	recQ	LU632_RS24095	0.80	+0.5
4,596,027	+	recQ	LU632_RS24095	0.80	-1.8
4,596,027	+	recQ	LU632_RS24095	0.80	+2.8
4,596,028	-	recQ	LU632_RS24095	0.80	+1.2
4,596,037	+	recQ	LU632_RS24095	0.81	-0.3
4,596,217	-				-0.8
4,596,347	+				-2.3
4,596,461	+				+0.9
4,596,493	+				+1.5
4,596,495	+				-0.2
4,596,496	-				+0.5
4,596,524	-				+0.7
4,596,527	+				+1.2
4,596,527	+				+0.2
4,596,536	-	pldA	LU632_RS24100	0.11	+1.0
4,596,537	+	pldA	LU632_RS24100	0.11	+0.6
4,596,609	+	pldA	LU632_RS24100	0.19	+1.1
4,596,610	-	pldA	LU632_RS24100	0.19	+1.9
4,596,678	+	pldA	LU632_RS24100	0.27	+2.2
4,596,679	-	pldA	LU632_RS24100	0.27	+0.5
4,596,679	-	pldA	LU632_RS24100	0.27	-1.5
4,596,679	-	pldA	LU632_RS24100	0.27	+0.0
4,596,679	-	pldA	LU632_RS24100	0.27	+0.3
4,596,706	+	pldA	LU632_RS24100	0.30	+0.7
4,596,768	-	pldA	LU632_RS24100	0.37	+1.3
4,596,772	+	pldA	LU632_RS24100	0.38	+0.2
4,596,772	+	pldA	LU632_RS24100	0.38	-0.8
4,596,984	+	pldA	LU632_RS24100	0.62	-0.2
4,596,985	-	pldA	LU632_RS24100	0.62	+2.2
4,597,006	+	pldA	LU632_RS24100	0.64	+0.1
4,597,092	+	pldA	LU632_RS24100	0.74	+0.2
4,597,093	-	pldA	LU632_RS24100	0.74	+1.6
4,597,093	-	pldA	LU632_RS24100	0.74	+0.9
4,597,112	-	pldA	LU632_RS24100	0.76	+1.0
4,597,114	+	pldA	LU632_RS24100	0.77	-0.3
4,597,114	+	pldA	LU632_RS24100	0.77	-0.5
4,597,117	+	pldA	LU632_RS24100	0.77	+0.2
4,597,117	+	pldA	LU632_RS24100	0.77	+0.5
4,597,117	+	pldA	LU632_RS24100	0.77	+0.5
4,597,144	-	pldA	LU632_RS24100	0.80	+0.7
4,597,144	-	pldA	LU632_RS24100	0.80	-1.4
4,597,249	+				-1.2
4,597,249	+				-0.0
4,597,249	+				-0.8
4,597,434	-				-2.1
4,597,479	-				-1.3
4,597,523	+				-0.1
4,597,524	-				-0.5
4,597,524	-				-1.6
4,597,524	-				-1.1
4,597,567	-		LU632_RS24105	0.16	-2.1
4,597,913	-		LU632_RS24105	0.89	+0.1
4,597,968	+				+0.5
4,597,968	+				-0.8
4,597,980	+				+0.0
4,597,980	+				+0.5
4,597,981	-				-1.1
4,597,981	-				-1.3
4,598,044	+				-1.5
4,598,045	-				+1.0
4,598,071	+				-0.3
4,598,072	-				+0.3
4,598,072	-				-0.4
4,598,076	+				-1.5
4,598,082	+				+0.3
4,598,083	-				-0.9
4,598,220	-	rarD	LU632_RS24110	0.25	-0.8
4,598,247	+	rarD	LU632_RS24110	0.28	+0.9
4,598,311	+	rarD	LU632_RS24110	0.35	+0.6