Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23845

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
4,546,277	+				+0.5
4,546,278	+				+2.1
4,546,297	+				-0.3
4,546,301	+				+1.8
4,546,302	-				-1.1
4,546,302	-				-3.1
4,546,302	-				-0.1
4,546,303	+				+0.1
4,546,304	-				+1.5
4,546,304	-				-0.1
4,546,525	-				-0.2
4,546,533	-				-0.1
4,546,570	-				+1.2
4,546,735	-		LU632_RS23840	0.35	-0.2
4,546,735	-		LU632_RS23840	0.35	+0.9
4,546,783	+		LU632_RS23840	0.46	+0.8
4,546,783	+		LU632_RS23840	0.46	-0.7
4,546,783	+		LU632_RS23840	0.46	-0.5
4,546,784	-		LU632_RS23840	0.46	-0.6
4,546,821	+		LU632_RS23840	0.54	+0.6
4,546,838	+		LU632_RS23840	0.58	+0.3
4,546,838	+		LU632_RS23840	0.58	-0.5
4,546,845	-		LU632_RS23840	0.59	+0.3
4,546,848	+		LU632_RS23840	0.60	-1.8
4,546,848	+		LU632_RS23840	0.60	-0.2
4,546,848	+		LU632_RS23840	0.60	+1.5
4,546,848	+		LU632_RS23840	0.60	-0.2
4,546,849	-		LU632_RS23840	0.60	-0.7
4,546,864	+		LU632_RS23840	0.63	-0.5
4,546,866	+		LU632_RS23840	0.64	+0.0
4,546,866	+		LU632_RS23840	0.64	+1.3
4,546,866	+		LU632_RS23840	0.64	+0.9
4,546,867	-		LU632_RS23840	0.64	+0.0
4,546,867	-		LU632_RS23840	0.64	-0.6
4,546,867	-		LU632_RS23840	0.64	-2.4
4,546,867	-		LU632_RS23840	0.64	-0.9
4,546,867	-		LU632_RS23840	0.64	-0.1
4,546,867	-		LU632_RS23840	0.64	+2.4
4,546,889	+		LU632_RS23840	0.69	-3.4
4,546,890	-		LU632_RS23840	0.69	+0.1
4,546,996	+				+0.8
4,547,001	+				-1.8
4,547,001	+				-1.7
4,547,001	+				+0.8
4,547,001	+				-0.7
4,547,002	-				+1.2
4,547,086	-		LU632_RS23845	0.18	+2.6
4,547,086	-		LU632_RS23845	0.18	-0.5
4,547,108	-		LU632_RS23845	0.25	+1.0
4,547,114	+		LU632_RS23845	0.27	+1.5
4,547,115	-		LU632_RS23845	0.27	-1.7
4,547,180	+		LU632_RS23845	0.47	-2.2
4,547,271	-		LU632_RS23845	0.75	+1.8
4,547,285	-		LU632_RS23845	0.79	+1.0
4,547,366	+				+0.0
4,547,376	+				+0.0
4,547,376	+				-0.2
4,547,376	+				+1.5
4,547,381	-				+0.1
4,547,396	-				-3.1
4,547,433	-				-0.1
4,547,433	-				+0.0
4,547,433	-				+0.1
4,547,433	-				+1.2
4,547,447	-				+0.7
4,547,498	-				+0.6
4,547,498	-				-0.2
4,547,586	-				+1.5
4,547,586	-				-0.3
4,547,586	-				+0.2
4,547,586	-				+1.2
4,547,590	-				+0.8
4,547,590	-				-0.0