Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23600

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
4,500,929	-		LU632_RS23595	0.20	-0.5
4,500,929	-		LU632_RS23595	0.20	+0.2
4,500,959	+		LU632_RS23595	0.22	+0.4
4,500,959	+		LU632_RS23595	0.22	-1.1
4,500,959	+		LU632_RS23595	0.22	-0.1
4,500,959	+		LU632_RS23595	0.22	-0.9
4,500,959	+		LU632_RS23595	0.22	+1.3
4,500,960	-		LU632_RS23595	0.22	+0.0
4,500,960	-		LU632_RS23595	0.22	-0.8
4,500,960	-		LU632_RS23595	0.22	+0.5
4,500,960	-		LU632_RS23595	0.22	-1.0
4,500,960	-		LU632_RS23595	0.22	-1.3
4,500,962	-		LU632_RS23595	0.23	-0.6
4,501,022	-		LU632_RS23595	0.28	-0.0
4,501,108	-		LU632_RS23595	0.35	-0.1
4,501,161	+		LU632_RS23595	0.39	-0.4
4,501,175	+		LU632_RS23595	0.40	-0.9
4,501,432	+		LU632_RS23595	0.61	+0.4
4,501,433	-		LU632_RS23595	0.61	+0.9
4,501,496	+		LU632_RS23595	0.66	+0.1
4,501,496	+		LU632_RS23595	0.66	-0.8
4,501,497	-		LU632_RS23595	0.66	+0.6
4,501,497	-		LU632_RS23595	0.66	+1.0
4,501,595	+		LU632_RS23595	0.74	-0.8
4,501,597	+		LU632_RS23595	0.75	-0.1
4,501,597	+		LU632_RS23595	0.75	+0.8
4,501,597	+		LU632_RS23595	0.75	+0.5
4,501,635	-		LU632_RS23595	0.78	+0.7
4,501,637	+		LU632_RS23595	0.78	+0.1
4,501,638	-		LU632_RS23595	0.78	+1.5
4,501,638	-		LU632_RS23595	0.78	-2.4
4,501,698	+		LU632_RS23595	0.83	+2.4
4,501,698	+		LU632_RS23595	0.83	-0.1
4,501,699	-		LU632_RS23595	0.83	-1.4
4,501,699	-		LU632_RS23595	0.83	+0.9
4,501,771	+		LU632_RS23595	0.89	+0.5
4,501,771	+		LU632_RS23595	0.89	-0.1
4,501,909	+				+0.3
4,501,981	+				+0.1
4,501,984	+				+0.4
4,501,984	+				-0.2
4,501,984	+				+0.0
4,501,985	-				-0.2
4,501,985	-				+1.3
4,501,985	-				+0.4
4,501,991	+				-1.1
4,502,060	-				-0.4
4,502,084	+				+0.7
4,502,085	-				+0.4
4,502,139	-		LU632_RS23600	0.11	+0.1
4,502,148	-		LU632_RS23600	0.12	-0.1
4,502,202	+		LU632_RS23600	0.15	+1.3
4,502,203	-		LU632_RS23600	0.15	-0.9
4,502,236	+		LU632_RS23600	0.17	-0.7
4,502,236	+		LU632_RS23600	0.17	+0.1
4,502,251	+		LU632_RS23600	0.17	+0.4
4,502,306	+		LU632_RS23600	0.20	+1.6
4,502,306	+		LU632_RS23600	0.20	+0.7
4,502,306	+		LU632_RS23600	0.20	-1.7
4,502,306	+		LU632_RS23600	0.20	-0.9
4,502,306	+		LU632_RS23600	0.20	+0.0
4,502,307	-		LU632_RS23600	0.20	+0.3
4,502,307	-		LU632_RS23600	0.20	-1.9
4,502,307	-		LU632_RS23600	0.20	+0.2
4,502,307	-		LU632_RS23600	0.20	+0.6
4,502,307	-		LU632_RS23600	0.20	-0.5
4,502,307	-		LU632_RS23600	0.20	+1.5
4,502,307	-		LU632_RS23600	0.20	-0.5
4,502,308	+		LU632_RS23600	0.20	+1.2
4,502,308	+		LU632_RS23600	0.20	+0.3
4,502,308	+		LU632_RS23600	0.20	+0.3
4,502,309	-		LU632_RS23600	0.21	+1.0
4,502,309	-		LU632_RS23600	0.21	+1.5
4,502,363	+		LU632_RS23600	0.23	-1.5
4,502,363	+		LU632_RS23600	0.23	+0.1
4,502,364	-		LU632_RS23600	0.23	+1.1
4,502,364	-		LU632_RS23600	0.23	+0.9
4,502,364	-		LU632_RS23600	0.23	-0.2
4,502,364	-		LU632_RS23600	0.23	-0.3
4,502,368	+		LU632_RS23600	0.24	+0.4
4,502,414	+		LU632_RS23600	0.26	+0.1
4,502,415	-		LU632_RS23600	0.26	-0.3
4,502,433	+		LU632_RS23600	0.27	+0.3
4,502,433	+		LU632_RS23600	0.27	-0.5
4,502,433	+		LU632_RS23600	0.27	+1.4
4,502,434	-		LU632_RS23600	0.27	+1.0
4,502,522	+		LU632_RS23600	0.32	+0.7
4,502,523	-		LU632_RS23600	0.32	+0.1
4,502,563	+		LU632_RS23600	0.34	+0.5
4,502,622	-		LU632_RS23600	0.37	+1.6
4,502,657	+		LU632_RS23600	0.39	+0.2
4,502,664	+		LU632_RS23600	0.40	+0.8
4,502,664	+		LU632_RS23600	0.40	+0.3
4,502,684	-		LU632_RS23600	0.41	-0.2
4,502,693	+		LU632_RS23600	0.41	+0.4
4,502,699	+		LU632_RS23600	0.41	-0.7
4,502,702	+		LU632_RS23600	0.42	-1.2
4,502,702	+		LU632_RS23600	0.42	+0.8
4,502,797	+		LU632_RS23600	0.47	+0.1
4,502,803	-		LU632_RS23600	0.47	-0.1
4,502,836	+		LU632_RS23600	0.49	-0.1
4,502,836	+		LU632_RS23600	0.49	+0.9
4,502,837	-		LU632_RS23600	0.49	+0.3
4,502,837	-		LU632_RS23600	0.49	+0.5
4,502,887	+		LU632_RS23600	0.51	-1.1
4,502,896	-		LU632_RS23600	0.52	-0.8
4,502,898	-		LU632_RS23600	0.52	+1.0
4,502,898	-		LU632_RS23600	0.52	-0.3
4,502,974	+		LU632_RS23600	0.56	+0.2
4,502,974	+		LU632_RS23600	0.56	-1.8
4,503,031	+		LU632_RS23600	0.59	+0.0
4,503,436	-		LU632_RS23600	0.81	-1.2
4,503,473	+		LU632_RS23600	0.83	-0.0
4,503,622	+				-0.3
4,503,626	-				-1.2
4,503,626	-				-2.7
4,503,630	-				-0.6
4,503,631	+				-1.1
4,503,631	+				+0.1
4,503,702	+				+1.1
4,503,719	-				-0.4
4,503,799	-				+0.4
4,504,522	+				+0.0
4,504,522	+				-0.5
4,504,560	+				-0.3
4,504,560	+				-0.5
4,504,564	+				+0.3
4,504,564	+				+1.8
4,504,564	+				+1.2
4,504,581	+				+0.2
4,504,582	-				-0.4
4,504,591	+				-0.6
4,504,591	+				-0.3
4,504,591	+				+0.6
4,504,591	+				-0.5
4,504,591	+				+1.3
4,504,591	-				-2.2
4,504,592	-				+1.3
4,504,592	-				+0.5
4,504,593	+				+0.9
4,504,737	-				+0.4
4,504,740	-				-0.1
4,504,740	-				-0.5
4,504,740	-				+0.5
4,504,740	-				+1.2
4,504,741	+				-0.0
4,504,741	+				-1.7
4,504,741	+				-2.0
4,504,741	+				+0.0
4,504,742	-				-0.4
4,504,742	-				+0.7
4,504,745	+				+0.5
4,504,746	-				+2.2