Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23055

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS23050 and LU632_RS23055 are separated by 963 nucleotidesLU632_RS23055 and LU632_RS23060 are separated by 41 nucleotides LU632_RS23050: LU632_RS23050 - hypothetical protein, at 4,390,795 to 4,391,049 _RS23050 LU632_RS23055: LU632_RS23055 - serine kinase, at 4,392,013 to 4,393,251 _RS23055 LU632_RS23060: LU632_RS23060 - ATP-grasp domain-containing protein, at 4,393,293 to 4,394,540 _RS23060 Position (kb) 4392 4393 4394Strain fitness (log2 ratio) -2 -1 0 1at 4391.031 kb on + strandat 4391.031 kb on + strandat 4391.032 kb on - strandat 4391.036 kb on - strandat 4391.055 kb on + strandat 4391.056 kb on - strandat 4391.115 kb on - strandat 4391.115 kb on - strandat 4391.115 kb on - strandat 4391.225 kb on - strandat 4391.433 kb on + strandat 4391.433 kb on + strandat 4391.434 kb on - strandat 4391.446 kb on + strandat 4391.446 kb on + strandat 4391.480 kb on + strandat 4391.481 kb on - strandat 4391.642 kb on + strandat 4391.647 kb on - strandat 4391.700 kb on + strandat 4391.701 kb on - strandat 4391.723 kb on + strandat 4391.723 kb on + strandat 4391.724 kb on - strandat 4391.770 kb on + strandat 4391.821 kb on - strandat 4391.986 kb on + strandat 4392.007 kb on + strandat 4392.221 kb on + strand, within LU632_RS23055at 4392.221 kb on + strand, within LU632_RS23055at 4392.221 kb on + strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.222 kb on - strand, within LU632_RS23055at 4392.223 kb on + strand, within LU632_RS23055at 4392.223 kb on + strand, within LU632_RS23055at 4392.223 kb on + strand, within LU632_RS23055at 4392.224 kb on - strand, within LU632_RS23055at 4392.224 kb on - strand, within LU632_RS23055at 4392.224 kb on - strand, within LU632_RS23055at 4392.224 kb on - strand, within LU632_RS23055at 4392.261 kb on + strand, within LU632_RS23055at 4392.263 kb on + strand, within LU632_RS23055at 4392.263 kb on + strand, within LU632_RS23055at 4392.264 kb on - strand, within LU632_RS23055at 4392.264 kb on - strand, within LU632_RS23055at 4392.450 kb on + strand, within LU632_RS23055at 4392.451 kb on - strand, within LU632_RS23055at 4392.451 kb on - strand, within LU632_RS23055at 4392.451 kb on - strand, within LU632_RS23055at 4392.588 kb on + strand, within LU632_RS23055at 4392.590 kb on + strand, within LU632_RS23055at 4392.590 kb on + strand, within LU632_RS23055at 4392.613 kb on + strand, within LU632_RS23055at 4392.614 kb on - strand, within LU632_RS23055at 4392.615 kb on + strand, within LU632_RS23055at 4392.615 kb on + strand, within LU632_RS23055at 4392.616 kb on - strand, within LU632_RS23055at 4392.680 kb on + strand, within LU632_RS23055at 4392.728 kb on - strand, within LU632_RS23055at 4393.100 kb on - strand, within LU632_RS23055at 4393.143 kb on + strandat 4393.309 kb on + strandat 4393.348 kb on + strandat 4393.349 kb on - strandat 4393.415 kb on - strandat 4393.517 kb on - strand, within LU632_RS23060at 4393.559 kb on - strand, within LU632_RS23060at 4393.627 kb on - strand, within LU632_RS23060at 4393.627 kb on - strand, within LU632_RS23060at 4393.648 kb on + strand, within LU632_RS23060at 4393.649 kb on - strand, within LU632_RS23060at 4393.651 kb on - strand, within LU632_RS23060at 4393.651 kb on - strand, within LU632_RS23060at 4393.707 kb on + strand, within LU632_RS23060at 4393.751 kb on - strand, within LU632_RS23060at 4393.779 kb on + strand, within LU632_RS23060at 4393.780 kb on - strand, within LU632_RS23060at 4393.806 kb on + strand, within LU632_RS23060at 4393.808 kb on + strand, within LU632_RS23060at 4393.808 kb on + strand, within LU632_RS23060at 4393.809 kb on - strand, within LU632_RS23060at 4393.943 kb on - strand, within LU632_RS23060

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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4,391,031 + +0.2
4,391,031 + +0.1
4,391,032 - +0.2
4,391,036 - +0.3
4,391,055 + +1.2
4,391,056 - +0.3
4,391,115 - +0.4
4,391,115 - -0.9
4,391,115 - +0.6
4,391,225 - -0.0
4,391,433 + +1.3
4,391,433 + +0.3
4,391,434 - +0.5
4,391,446 + +1.0
4,391,446 + -0.6
4,391,480 + +1.2
4,391,481 - -1.4
4,391,642 + -2.0
4,391,647 - -1.4
4,391,700 + -0.4
4,391,701 - -2.3
4,391,723 + -0.9
4,391,723 + +0.8
4,391,724 - -0.1
4,391,770 + +0.0
4,391,821 - +0.8
4,391,986 + -0.6
4,392,007 + -0.3
4,392,221 + LU632_RS23055 0.17 +1.4
4,392,221 + LU632_RS23055 0.17 -1.2
4,392,221 + LU632_RS23055 0.17 +1.0
4,392,222 - LU632_RS23055 0.17 +0.9
4,392,222 - LU632_RS23055 0.17 +0.2
4,392,222 - LU632_RS23055 0.17 -0.3
4,392,222 - LU632_RS23055 0.17 +0.1
4,392,222 - LU632_RS23055 0.17 -0.3
4,392,222 - LU632_RS23055 0.17 +0.7
4,392,222 - LU632_RS23055 0.17 -0.4
4,392,222 - LU632_RS23055 0.17 +1.3
4,392,222 - LU632_RS23055 0.17 -0.7
4,392,222 - LU632_RS23055 0.17 +0.2
4,392,222 - LU632_RS23055 0.17 +0.9
4,392,223 + LU632_RS23055 0.17 +0.1
4,392,223 + LU632_RS23055 0.17 -1.2
4,392,223 + LU632_RS23055 0.17 -0.4
4,392,224 - LU632_RS23055 0.17 -0.2
4,392,224 - LU632_RS23055 0.17 -0.2
4,392,224 - LU632_RS23055 0.17 -1.0
4,392,224 - LU632_RS23055 0.17 -0.3
4,392,261 + LU632_RS23055 0.20 -1.6
4,392,263 + LU632_RS23055 0.20 +0.4
4,392,263 + LU632_RS23055 0.20 +1.0
4,392,264 - LU632_RS23055 0.20 -0.3
4,392,264 - LU632_RS23055 0.20 -0.1
4,392,450 + LU632_RS23055 0.35 +0.2
4,392,451 - LU632_RS23055 0.35 -0.7
4,392,451 - LU632_RS23055 0.35 -0.9
4,392,451 - LU632_RS23055 0.35 +0.2
4,392,588 + LU632_RS23055 0.46 -0.5
4,392,590 + LU632_RS23055 0.47 +0.2
4,392,590 + LU632_RS23055 0.47 +0.8
4,392,613 + LU632_RS23055 0.48 +1.4
4,392,614 - LU632_RS23055 0.49 +0.1
4,392,615 + LU632_RS23055 0.49 +0.1
4,392,615 + LU632_RS23055 0.49 -1.7
4,392,616 - LU632_RS23055 0.49 +1.0
4,392,680 + LU632_RS23055 0.54 +0.4
4,392,728 - LU632_RS23055 0.58 -0.2
4,393,100 - LU632_RS23055 0.88 -1.5
4,393,143 + +0.8
4,393,309 + +0.4
4,393,348 + -0.2
4,393,349 - -0.4
4,393,415 - -1.2
4,393,517 - LU632_RS23060 0.18 -0.2
4,393,559 - LU632_RS23060 0.21 -0.1
4,393,627 - LU632_RS23060 0.27 -0.7
4,393,627 - LU632_RS23060 0.27 -1.2
4,393,648 + LU632_RS23060 0.28 -1.1
4,393,649 - LU632_RS23060 0.29 -0.3
4,393,651 - LU632_RS23060 0.29 +0.3
4,393,651 - LU632_RS23060 0.29 +0.2
4,393,707 + LU632_RS23060 0.33 +0.6
4,393,751 - LU632_RS23060 0.37 -0.5
4,393,779 + LU632_RS23060 0.39 -1.1
4,393,780 - LU632_RS23060 0.39 +0.8
4,393,806 + LU632_RS23060 0.41 +0.8
4,393,808 + LU632_RS23060 0.41 -0.6
4,393,808 + LU632_RS23060 0.41 -0.4
4,393,809 - LU632_RS23060 0.41 -0.0
4,393,943 - LU632_RS23060 0.52 -0.6

Or see this region's nucleotide sequence