Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21845

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
4,173,404	+				-0.6
4,173,405	-				+1.0
4,173,408	-				-0.8
4,173,408	-				-0.4
4,173,408	-				+0.1
4,173,408	-				+0.6
4,173,408	-				-1.6
4,173,408	-				-1.7
4,173,408	-				-0.0
4,173,409	+				-0.0
4,173,409	+				-0.5
4,173,410	-				+0.3
4,173,506	-				-0.6
4,173,523	-				+1.1
4,173,529	+				-0.2
4,173,640	-	fieF	LU632_RS21845	0.13	-1.2
4,173,650	+	fieF	LU632_RS21845	0.14	-0.3
4,173,840	+	fieF	LU632_RS21845	0.36	+2.1
4,173,841	-	fieF	LU632_RS21845	0.36	+0.5
4,174,056	-	fieF	LU632_RS21845	0.60	+0.3
4,174,110	-	fieF	LU632_RS21845	0.66	+0.2
4,174,110	-	fieF	LU632_RS21845	0.66	-0.4
4,174,110	-	fieF	LU632_RS21845	0.66	-1.8
4,174,110	-	fieF	LU632_RS21845	0.66	-0.7
4,174,147	+	fieF	LU632_RS21845	0.70	-0.5
4,174,148	-	fieF	LU632_RS21845	0.70	+0.6
4,174,249	+	fieF	LU632_RS21845	0.81	+1.4
4,174,250	-	fieF	LU632_RS21845	0.82	+0.0
4,174,271	+	fieF	LU632_RS21845	0.84	-0.2
4,174,272	-	fieF	LU632_RS21845	0.84	-2.0
4,174,272	-	fieF	LU632_RS21845	0.84	+1.0
4,174,272	-	fieF	LU632_RS21845	0.84	-2.8
4,174,272	-	fieF	LU632_RS21845	0.84	-0.6
4,174,387	+				-0.6
4,174,427	+				-0.5
4,174,427	+				+1.7
4,174,427	+				+0.1
4,174,428	-				+0.4
4,174,428	-				-0.4
4,174,429	+				+1.4
4,174,429	+				+0.1
4,174,429	+				-0.7
4,174,445	+				+0.5
4,174,640	+				+0.6
4,174,641	-				+1.3
4,174,645	-				+0.8
4,174,676	-				-0.4
4,174,687	+				+0.1
4,174,687	+				-0.9
4,174,689	+				+0.4
4,174,689	+				-0.3
4,174,738	+				-0.5
4,174,753	+				+2.4
4,174,754	-				+0.4
4,174,754	-				+3.1
4,174,836	-	cpxP	LU632_RS21850	0.19	-0.3
4,174,934	+	cpxP	LU632_RS21850	0.38	+0.1
4,174,934	+	cpxP	LU632_RS21850	0.38	-0.6
4,174,945	+	cpxP	LU632_RS21850	0.41	+0.5
4,174,945	+	cpxP	LU632_RS21850	0.41	+1.1
4,174,946	-	cpxP	LU632_RS21850	0.41	-0.4
4,174,946	-	cpxP	LU632_RS21850	0.41	+0.6
4,174,946	-	cpxP	LU632_RS21850	0.41	+0.8
4,174,946	-	cpxP	LU632_RS21850	0.41	+0.1
4,174,946	-	cpxP	LU632_RS21850	0.41	-0.8
4,174,979	-	cpxP	LU632_RS21850	0.47	+0.3
4,174,997	+	cpxP	LU632_RS21850	0.51	+0.2
4,175,013	-	cpxP	LU632_RS21850	0.54	+0.1
4,175,234	+				+0.3
4,175,235	-				+0.3
4,175,235	-				-0.4
4,175,337	-				+1.9
4,175,337	-				+0.6
4,175,337	-				-1.2