Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21650

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS21640 and LU632_RS21645 overlap by 82 nucleotidesLU632_RS21645 and LU632_RS21650 are separated by 92 nucleotidesLU632_RS21650 and LU632_RS21655 overlap by 14 nucleotides LU632_RS21640: LU632_RS21640 - IS1 family transposase, at 4,138,594 to 4,139,097 _RS21640 LU632_RS21645: LU632_RS21645 - transposase, at 4,139,016 to 4,139,291 _RS21645 LU632_RS21650: LU632_RS21650 - hypothetical protein, at 4,139,384 to 4,139,737 _RS21650 LU632_RS21655: LU632_RS21655 - pesticin C-terminus-like muramidase, at 4,139,724 to 4,140,371 _RS21655 Position (kb) 4139 4140Strain fitness (log2 ratio) -2 -1 0 1at 4138.437 kb on + strandat 4140.412 kb on + strandat 4140.420 kb on + strandat 4140.469 kb on + strandat 4140.513 kb on - strandat 4140.513 kb on - strandat 4140.515 kb on - strandat 4140.613 kb on - strandat 4140.631 kb on + strandat 4140.632 kb on - strandat 4140.632 kb on - strandat 4140.650 kb on + strandat 4140.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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4,138,437 + -0.2
4,140,412 + +0.2
4,140,420 + -0.9
4,140,469 + +0.4
4,140,513 - +0.2
4,140,513 - -1.6
4,140,515 - +0.9
4,140,613 - -0.1
4,140,631 + -1.2
4,140,632 - -2.1
4,140,632 - -0.2
4,140,650 + -0.9
4,140,651 - +0.5

Or see this region's nucleotide sequence