Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19255

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
3,640,783	+				+0.4
3,640,798	+	livH	LU632_RS19250	0.11	-3.0
3,640,798	+	livH	LU632_RS19250	0.11	+0.2
3,640,823	+	livH	LU632_RS19250	0.14	-0.7
3,640,827	+	livH	LU632_RS19250	0.15	+0.9
3,640,859	+	livH	LU632_RS19250	0.18	-1.3
3,640,919	+	livH	LU632_RS19250	0.24	+0.5
3,640,919	+	livH	LU632_RS19250	0.24	+1.3
3,640,919	+	livH	LU632_RS19250	0.24	-1.2
3,640,920	-	livH	LU632_RS19250	0.25	+0.7
3,640,921	+	livH	LU632_RS19250	0.25	+0.2
3,640,921	+	livH	LU632_RS19250	0.25	-0.7
3,640,921	+	livH	LU632_RS19250	0.25	-0.4
3,640,939	+	livH	LU632_RS19250	0.27	+1.3
3,640,940	-	livH	LU632_RS19250	0.27	-0.8
3,640,957	-	livH	LU632_RS19250	0.29	-1.7
3,641,100	+	livH	LU632_RS19250	0.44	-0.3
3,641,101	-	livH	LU632_RS19250	0.44	+0.1
3,641,101	-	livH	LU632_RS19250	0.44	-1.8
3,641,117	+	livH	LU632_RS19250	0.46	-0.6
3,641,117	+	livH	LU632_RS19250	0.46	+0.0
3,641,117	+	livH	LU632_RS19250	0.46	-1.3
3,641,118	-	livH	LU632_RS19250	0.46	-0.3
3,641,118	-	livH	LU632_RS19250	0.46	-1.5
3,641,118	-	livH	LU632_RS19250	0.46	+0.3
3,641,283	+	livH	LU632_RS19250	0.64	+0.8
3,641,283	+	livH	LU632_RS19250	0.64	-0.8
3,641,283	+	livH	LU632_RS19250	0.64	-0.4
3,641,284	-	livH	LU632_RS19250	0.64	-0.3
3,641,332	+	livH	LU632_RS19250	0.69	-1.0
3,641,387	+	livH	LU632_RS19250	0.75	-0.8
3,641,465	-	livH	LU632_RS19250	0.83	+1.1
3,641,479	+	livH	LU632_RS19250	0.85	-0.3
3,641,479	+	livH	LU632_RS19250	0.85	+0.6
3,641,479	+	livH	LU632_RS19250	0.85	-1.9
3,641,480	-	livH	LU632_RS19250	0.85	+0.6
3,641,480	-	livH	LU632_RS19250	0.85	-0.3
3,641,480	-	livH	LU632_RS19250	0.85	+0.3
3,641,480	-	livH	LU632_RS19250	0.85	-2.3
3,641,480	-	livH	LU632_RS19250	0.85	-0.8
3,641,480	-	livH	LU632_RS19250	0.85	+0.3
3,641,480	-	livH	LU632_RS19250	0.85	+1.1
3,641,480	-	livH	LU632_RS19250	0.85	-1.0
3,641,480	-	livH	LU632_RS19250	0.85	-1.6
3,641,480	-	livH	LU632_RS19250	0.85	+0.9
3,641,480	-	livH	LU632_RS19250	0.85	-0.7
3,641,480	-	livH	LU632_RS19250	0.85	+0.3
3,641,480	-	livH	LU632_RS19250	0.85	-2.4
3,641,480	-	livH	LU632_RS19250	0.85	-1.2
3,641,480	-	livH	LU632_RS19250	0.85	-0.2
3,641,482	-	livH	LU632_RS19250	0.85	+0.2
3,641,516	+	livH	LU632_RS19250	0.89	-0.0
3,641,522	-	livH	LU632_RS19250	0.90	-0.3
3,641,522	-	livH	LU632_RS19250	0.90	-1.3
3,641,522	-	livH	LU632_RS19250	0.90	-2.7
3,641,618	+				-0.4
3,641,619	-				-1.0
3,641,619	-				-2.4
3,641,625	+				-0.3
3,641,626	-				-0.3
3,641,630	+				-0.5
3,641,631	-				-0.3
3,641,698	+				-1.1
3,641,698	+				-1.9
3,641,699	-				-0.7
3,641,699	-				-0.1
3,641,699	-				+2.0
3,641,699	-				+0.3
3,641,757	+				+0.6
3,641,758	-				-1.2
3,641,758	-				+1.4
3,641,758	-				-0.2
3,641,758	-				+1.9
3,641,761	+				-0.8
3,641,762	-				-1.8
3,641,798	+				-2.2
3,641,798	+				+0.3
3,641,900	+		LU632_RS19255	0.13	+1.3
3,641,901	-		LU632_RS19255	0.13	+0.1
3,642,074	+		LU632_RS19255	0.28	-0.8
3,642,074	+		LU632_RS19255	0.28	-0.4
3,642,075	-		LU632_RS19255	0.28	-1.1
3,642,211	+		LU632_RS19255	0.40	-2.0
3,642,412	+		LU632_RS19255	0.58	-0.6
3,642,465	+		LU632_RS19255	0.63	-1.0
3,642,465	+		LU632_RS19255	0.63	-0.1
3,642,470	+		LU632_RS19255	0.64	+1.2
3,642,494	+		LU632_RS19255	0.66	-0.7
3,642,494	+		LU632_RS19255	0.66	-0.1
3,642,495	-		LU632_RS19255	0.66	-1.1
3,642,538	+		LU632_RS19255	0.70	-0.3
3,642,538	+		LU632_RS19255	0.70	-0.8
3,642,540	+		LU632_RS19255	0.70	+0.1
3,642,541	-		LU632_RS19255	0.70	+0.6
3,642,541	-		LU632_RS19255	0.70	-1.2
3,642,541	-		LU632_RS19255	0.70	+2.1
3,642,541	-		LU632_RS19255	0.70	-1.1
3,642,541	-		LU632_RS19255	0.70	-1.2
3,642,596	+		LU632_RS19255	0.75	-1.5
3,642,659	-		LU632_RS19255	0.81	+0.4
3,642,687	-		LU632_RS19255	0.83	+1.1
3,642,687	-		LU632_RS19255	0.83	-2.3
3,642,690	-		LU632_RS19255	0.83	-0.6
3,642,690	-		LU632_RS19255	0.83	+0.3
3,642,707	+		LU632_RS19255	0.85	+0.1
3,642,707	+		LU632_RS19255	0.85	-1.5
3,642,708	-		LU632_RS19255	0.85	+1.2
3,642,716	+		LU632_RS19255	0.86	-1.0
3,642,752	-		LU632_RS19255	0.89	-2.0
3,642,912	+				-0.2
3,642,912	+				-0.4
3,642,913	-				-1.4
3,642,913	-				+1.8
3,643,098	-				+0.1
3,643,112	-				-1.3
3,643,230	+				+2.5
3,643,231	-				-0.6
3,643,268	+				-0.8
3,643,269	-				+0.9
3,643,269	-				+0.7
3,643,271	+				-0.8
3,643,271	+				+1.5
3,643,272	-				+0.9
3,643,274	-				+0.2
3,643,464	-	panM	LU632_RS19260	0.52	-0.1
3,643,572	+	panM	LU632_RS19260	0.79	-0.3
3,643,574	+	panM	LU632_RS19260	0.79	-1.7
3,643,575	-	panM	LU632_RS19260	0.80	+1.0
3,643,598	+	panM	LU632_RS19260	0.85	+0.4
3,643,694	-				+1.7
3,643,761	+				-0.7
3,643,762	-				+0.9