Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19165

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
3,622,077	+	gntR	LU632_RS19160	0.53	+2.3
3,622,078	-	gntR	LU632_RS19160	0.53	+2.6
3,622,151	+	gntR	LU632_RS19160	0.60	+1.0
3,622,286	-	gntR	LU632_RS19160	0.74	-0.6
3,622,419	+	gntR	LU632_RS19160	0.87	+0.3
3,622,554	+				-0.0
3,622,554	+				-2.2
3,622,640	+				-1.3
3,622,640	+				+2.5
3,622,728	+				+0.7
3,622,728	+				+0.4
3,622,728	+				-0.1
3,622,728	+				+0.7
3,622,728	+				-0.4
3,622,728	+				+0.9
3,622,728	-				+0.3
3,622,730	-				+0.8
3,622,734	+				-0.0
3,622,734	+				+1.4
3,622,734	+				+0.9
3,622,734	+				-0.0
3,622,735	-				+1.1
3,622,836	+	gntK	LU632_RS19165	0.20	-0.7
3,622,837	-	gntK	LU632_RS19165	0.20	-2.1
3,622,962	+	gntK	LU632_RS19165	0.44	+0.1
3,622,962	+	gntK	LU632_RS19165	0.44	-0.4
3,622,966	-	gntK	LU632_RS19165	0.44	+0.8
3,623,260	+				+0.3
3,623,271	+				+0.3
3,623,271	+				-0.3
3,623,271	+				-0.3
3,623,272	-				+0.5
3,623,272	-				-0.3
3,623,272	-				-0.2
3,623,272	-				-0.5
3,623,272	-				+1.5
3,623,415	+	gntU	LU632_RS19170	0.11	-1.3
3,623,579	-	gntU	LU632_RS19170	0.23	-0.9
3,623,579	-	gntU	LU632_RS19170	0.23	-0.4
3,623,579	-	gntU	LU632_RS19170	0.23	-1.2
3,623,838	+	gntU	LU632_RS19170	0.42	+0.6
3,623,839	-	gntU	LU632_RS19170	0.42	-1.2
3,623,892	+	gntU	LU632_RS19170	0.46	-0.5
3,623,893	-	gntU	LU632_RS19170	0.46	+0.2
3,623,934	+	gntU	LU632_RS19170	0.49	-2.9
3,624,039	-	gntU	LU632_RS19170	0.57	+0.3
3,624,039	-	gntU	LU632_RS19170	0.57	-0.6
3,624,040	+	gntU	LU632_RS19170	0.57	-1.0
3,624,041	-	gntU	LU632_RS19170	0.57	-0.7
3,624,041	-	gntU	LU632_RS19170	0.57	-1.3
3,624,106	+	gntU	LU632_RS19170	0.62	+2.2
3,624,107	-	gntU	LU632_RS19170	0.62	+1.3
3,624,107	-	gntU	LU632_RS19170	0.62	+1.3
3,624,107	-	gntU	LU632_RS19170	0.62	-0.4