Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17675

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
3,317,889	-	tssC	LU632_RS17665	0.64	-0.3
3,318,003	+	tssC	LU632_RS17665	0.74	-0.9
3,318,003	+	tssC	LU632_RS17665	0.74	-3.1
3,318,003	+	tssC	LU632_RS17665	0.74	-2.4
3,318,004	-	tssC	LU632_RS17665	0.74	-0.2
3,318,027	+	tssC	LU632_RS17665	0.75	+1.8
3,318,027	+	tssC	LU632_RS17665	0.75	-0.3
3,318,028	-	tssC	LU632_RS17665	0.75	+0.0
3,318,029	+	tssC	LU632_RS17665	0.76	+0.4
3,318,029	+	tssC	LU632_RS17665	0.76	+0.4
3,318,029	+	tssC	LU632_RS17665	0.76	-0.8
3,318,030	-	tssC	LU632_RS17665	0.76	-0.1
3,318,057	+	tssC	LU632_RS17665	0.78	+0.6
3,318,057	+	tssC	LU632_RS17665	0.78	-0.0
3,318,058	-	tssC	LU632_RS17665	0.78	-0.6
3,318,058	-	tssC	LU632_RS17665	0.78	+0.9
3,318,058	-	tssC	LU632_RS17665	0.78	-0.5
3,318,145	-	tssC	LU632_RS17665	0.85	-0.3
3,318,179	-	tssC	LU632_RS17665	0.88	+1.4
3,318,257	+				+1.2
3,318,258	-				-0.1
3,318,258	-				-0.0
3,318,258	-				+0.4
3,318,258	-				+0.0
3,318,258	-				-0.9
3,318,279	-				-1.4
3,318,279	-				+0.8
3,318,283	-				-0.7
3,318,283	-				+1.0
3,318,356	-				+0.8
3,318,358	+				+1.4
3,318,358	+				+0.4
3,318,359	-				-0.8
3,318,555	-	tssE	LU632_RS17670	0.48	+0.5
3,318,635	-	tssE	LU632_RS17670	0.67	-0.1
3,318,741	-				-0.5
3,318,765	+				-0.9
3,318,777	+				-0.2
3,318,777	+				+0.3
3,318,777	+				+0.7
3,318,778	-				+0.6
3,318,781	+				-0.4
3,318,867	-				+0.2
3,318,867	-				+0.6
3,318,947	-				-0.9
3,319,004	-	tssF	LU632_RS17675	0.12	+0.4
3,319,019	+	tssF	LU632_RS17675	0.13	-0.0
3,319,019	+	tssF	LU632_RS17675	0.13	+0.5
3,319,020	-	tssF	LU632_RS17675	0.13	-0.9
3,319,075	+	tssF	LU632_RS17675	0.16	-0.2
3,319,075	+	tssF	LU632_RS17675	0.16	+0.6
3,319,075	+	tssF	LU632_RS17675	0.16	-0.4
3,319,189	+	tssF	LU632_RS17675	0.22	-1.0
3,319,189	+	tssF	LU632_RS17675	0.22	+0.2
3,319,190	-	tssF	LU632_RS17675	0.22	+0.3
3,319,221	+	tssF	LU632_RS17675	0.24	+0.7
3,319,312	+	tssF	LU632_RS17675	0.29	+0.5
3,319,313	-	tssF	LU632_RS17675	0.29	+0.7
3,319,380	-	tssF	LU632_RS17675	0.33	-0.1
3,319,394	+	tssF	LU632_RS17675	0.33	-0.1
3,319,395	-	tssF	LU632_RS17675	0.33	+0.5
3,319,395	-	tssF	LU632_RS17675	0.33	+0.3
3,319,541	+	tssF	LU632_RS17675	0.41	+0.5
3,319,541	+	tssF	LU632_RS17675	0.41	-0.0
3,319,541	+	tssF	LU632_RS17675	0.41	+0.5
3,319,542	-	tssF	LU632_RS17675	0.42	-0.4
3,319,542	-	tssF	LU632_RS17675	0.42	-1.6
3,319,738	+	tssF	LU632_RS17675	0.52	+0.1
3,319,739	-	tssF	LU632_RS17675	0.52	-0.4
3,319,743	+	tssF	LU632_RS17675	0.53	+0.4
3,319,810	-	tssF	LU632_RS17675	0.56	+0.1
3,319,810	-	tssF	LU632_RS17675	0.56	+0.1
3,319,810	-	tssF	LU632_RS17675	0.56	+0.0
3,319,828	-	tssF	LU632_RS17675	0.57	-1.8
3,319,919	+	tssF	LU632_RS17675	0.62	-0.4
3,319,920	-	tssF	LU632_RS17675	0.62	+0.7
3,319,946	+	tssF	LU632_RS17675	0.64	-0.3
3,320,225	-	tssF	LU632_RS17675	0.79	+0.7
3,320,225	-	tssF	LU632_RS17675	0.79	+0.5
3,320,233	+	tssF	LU632_RS17675	0.80	+2.1
3,320,233	+	tssF	LU632_RS17675	0.80	-1.9
3,320,233	+	tssF	LU632_RS17675	0.80	+0.5
3,320,233	+	tssF	LU632_RS17675	0.80	+0.4
3,320,233	+	tssF	LU632_RS17675	0.80	+0.9
3,320,234	-	tssF	LU632_RS17675	0.80	+0.0
3,320,237	+	tssF	LU632_RS17675	0.80	+0.8
3,320,238	-	tssF	LU632_RS17675	0.80	-0.8
3,320,443	+				-0.9
3,320,444	-				-0.4
3,320,463	-				+0.5
3,320,467	-				-2.1
3,320,526	+				-0.8
3,320,526	+				+0.3
3,320,552	-				-0.4
3,320,599	-				+2.5
3,320,600	+				-0.0
3,320,600	+				-0.4
3,320,600	+				+0.5
3,320,600	+				-1.4
3,320,601	-				-0.8
3,320,632	+				-0.5
3,320,632	+				-0.7
3,320,665	+				-0.7
3,320,665	+				+0.4
3,320,666	-				-0.2
3,320,666	-				+0.4
3,320,666	-				-0.6
3,320,666	-				+0.6
3,320,666	-				+1.9
3,320,691	+	tssG	LU632_RS17680	0.12	+0.1
3,320,691	+	tssG	LU632_RS17680	0.12	-0.7
3,320,691	+	tssG	LU632_RS17680	0.12	-0.9
3,320,692	-	tssG	LU632_RS17680	0.12	+0.2
3,320,692	-	tssG	LU632_RS17680	0.12	-0.1
3,320,692	-	tssG	LU632_RS17680	0.12	+0.2
3,320,848	+	tssG	LU632_RS17680	0.28	-0.1
3,320,849	-	tssG	LU632_RS17680	0.28	-0.2
3,320,968	+	tssG	LU632_RS17680	0.39	-0.1
3,320,968	+	tssG	LU632_RS17680	0.39	+0.4
3,320,968	+	tssG	LU632_RS17680	0.39	-1.5
3,320,968	+	tssG	LU632_RS17680	0.39	+1.7
3,320,969	+	tssG	LU632_RS17680	0.39	+1.5
3,320,969	-	tssG	LU632_RS17680	0.39	-1.6
3,320,969	-	tssG	LU632_RS17680	0.39	+0.1
3,320,969	-	tssG	LU632_RS17680	0.39	-1.1
3,321,016	+	tssG	LU632_RS17680	0.44	-0.2
3,321,017	-	tssG	LU632_RS17680	0.44	-0.9
3,321,017	-	tssG	LU632_RS17680	0.44	-0.9
3,321,017	-	tssG	LU632_RS17680	0.44	+1.0
3,321,017	-	tssG	LU632_RS17680	0.44	-0.9
3,321,065	+	tssG	LU632_RS17680	0.49	+0.1
3,321,065	+	tssG	LU632_RS17680	0.49	-1.2
3,321,066	-	tssG	LU632_RS17680	0.49	-0.5
3,321,089	-	tssG	LU632_RS17680	0.51	+0.8
3,321,197	-	tssG	LU632_RS17680	0.62	+0.6
3,321,197	-	tssG	LU632_RS17680	0.62	-1.5
3,321,246	+	tssG	LU632_RS17680	0.66	+0.6
3,321,246	+	tssG	LU632_RS17680	0.66	+0.1
3,321,246	+	tssG	LU632_RS17680	0.66	+1.2
3,321,246	+	tssG	LU632_RS17680	0.66	-0.8
3,321,247	-	tssG	LU632_RS17680	0.67	-0.6
3,321,247	-	tssG	LU632_RS17680	0.67	+0.4
3,321,247	-	tssG	LU632_RS17680	0.67	-0.6
3,321,249	-	tssG	LU632_RS17680	0.67	-0.1
3,321,289	-	tssG	LU632_RS17680	0.71	+0.9
3,321,289	-	tssG	LU632_RS17680	0.71	-1.6
3,321,342	+	tssG	LU632_RS17680	0.76	+1.1
3,321,343	-	tssG	LU632_RS17680	0.76	-1.1
3,321,397	-	tssG	LU632_RS17680	0.81	+0.0
3,321,398	-	tssG	LU632_RS17680	0.81	-0.6
3,321,510	+				+0.0
3,321,510	+				+0.4
3,321,510	+				-0.9
3,321,511	-				+1.2
3,321,511	-				-1.0
3,321,513	+				+0.2
3,321,514	-				-0.8