Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16995

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
3,204,195	+	recN	LU632_RS16985	0.80	+1.0
3,204,318	+	recN	LU632_RS16985	0.88	-0.2
3,204,318	+	recN	LU632_RS16985	0.88	-0.5
3,204,319	-	recN	LU632_RS16985	0.88	+0.2
3,204,319	-	recN	LU632_RS16985	0.88	-0.8
3,204,319	-	recN	LU632_RS16985	0.88	-1.4
3,204,457	-				-3.3
3,204,619	-				+0.2
3,204,628	-				-0.7
3,204,628	-				+0.5
3,204,634	+				+0.2
3,204,635	-				-0.8
3,204,665	+				-0.8
3,204,667	+				-1.1
3,204,672	-				+2.8
3,204,894	+	bamE	LU632_RS16990	0.64	-0.4
3,204,895	-	bamE	LU632_RS16990	0.64	-0.4
3,204,895	-	bamE	LU632_RS16990	0.64	-1.2
3,204,895	-	bamE	LU632_RS16990	0.64	-0.5
3,204,895	-	bamE	LU632_RS16990	0.64	+0.2
3,204,951	-	bamE	LU632_RS16990	0.80	-1.2
3,204,995	+				-0.4
3,204,995	+				+0.5
3,205,032	-				+0.2
3,205,040	-				-1.0