Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16985

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
3,201,869	-				+0.4
3,201,876	+				-1.3
3,202,776	+				+0.2
3,202,776	+				+1.1
3,202,882	+				+1.6
3,203,017	+				+4.4
3,203,017	+				-0.1
3,203,104	+	recN	LU632_RS16985	0.15	-0.5
3,203,114	-	recN	LU632_RS16985	0.15	-0.7
3,203,152	+	recN	LU632_RS16985	0.18	-2.1
3,203,153	-	recN	LU632_RS16985	0.18	-0.4
3,203,193	+	recN	LU632_RS16985	0.20	-0.4
3,203,230	+	recN	LU632_RS16985	0.22	-1.5
3,203,230	+	recN	LU632_RS16985	0.22	-0.9
3,203,270	-	recN	LU632_RS16985	0.25	-0.3
3,203,325	+	recN	LU632_RS16985	0.28	-1.1
3,203,341	+	recN	LU632_RS16985	0.29	-0.1
3,203,342	-	recN	LU632_RS16985	0.29	+0.1
3,203,424	+	recN	LU632_RS16985	0.34	-0.4
3,203,427	+	recN	LU632_RS16985	0.34	+0.0
3,203,498	+	recN	LU632_RS16985	0.38	-0.4
3,203,500	+	recN	LU632_RS16985	0.39	+1.1
3,203,501	-	recN	LU632_RS16985	0.39	-0.1
3,203,642	-	recN	LU632_RS16985	0.47	+0.2
3,203,710	-	recN	LU632_RS16985	0.51	+0.1
3,203,785	+	recN	LU632_RS16985	0.56	-0.1
3,203,785	+	recN	LU632_RS16985	0.56	-0.8
3,203,830	-	recN	LU632_RS16985	0.58	-0.5
3,203,830	-	recN	LU632_RS16985	0.58	-0.6
3,203,926	-	recN	LU632_RS16985	0.64	-0.0
3,203,926	-	recN	LU632_RS16985	0.64	+1.1
3,204,046	+	recN	LU632_RS16985	0.71	+0.5
3,204,046	+	recN	LU632_RS16985	0.71	+0.0
3,204,049	+	recN	LU632_RS16985	0.72	+0.8
3,204,049	+	recN	LU632_RS16985	0.72	+1.0
3,204,050	-	recN	LU632_RS16985	0.72	+0.7
3,204,053	+	recN	LU632_RS16985	0.72	+1.2
3,204,054	-	recN	LU632_RS16985	0.72	+0.2
3,204,054	-	recN	LU632_RS16985	0.72	+1.3
3,204,071	-	recN	LU632_RS16985	0.73	-1.0
3,204,195	+	recN	LU632_RS16985	0.80	+1.0
3,204,318	+	recN	LU632_RS16985	0.88	-0.2
3,204,318	+	recN	LU632_RS16985	0.88	-0.5
3,204,319	-	recN	LU632_RS16985	0.88	+0.2
3,204,319	-	recN	LU632_RS16985	0.88	-0.8
3,204,319	-	recN	LU632_RS16985	0.88	-1.4
3,204,457	-				-3.3
3,204,619	-				+0.2
3,204,628	-				-0.7
3,204,628	-				+0.5
3,204,634	+				+0.2
3,204,635	-				-0.8
3,204,665	+				-0.8
3,204,667	+				-1.1
3,204,672	-				+2.8
3,204,894	+	bamE	LU632_RS16990	0.64	-0.4
3,204,895	-	bamE	LU632_RS16990	0.64	-0.4
3,204,895	-	bamE	LU632_RS16990	0.64	-1.2
3,204,895	-	bamE	LU632_RS16990	0.64	-0.5
3,204,895	-	bamE	LU632_RS16990	0.64	+0.2
3,204,951	-	bamE	LU632_RS16990	0.80	-1.2
3,204,995	+				-0.4
3,204,995	+				+0.5
3,205,032	-				+0.2
3,205,040	-				-1.0