Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15445

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
2,924,817	+	srmB	LU632_RS15440	0.51	-0.8
2,924,818	-	srmB	LU632_RS15440	0.51	-0.1
2,924,961	-	srmB	LU632_RS15440	0.62	+0.0
2,924,991	+	srmB	LU632_RS15440	0.64	+0.1
2,924,991	+	srmB	LU632_RS15440	0.64	-0.2
2,925,133	-	srmB	LU632_RS15440	0.75	-0.9
2,925,133	-	srmB	LU632_RS15440	0.75	-0.6
2,925,133	-	srmB	LU632_RS15440	0.75	-0.6
2,925,133	-	srmB	LU632_RS15440	0.75	-0.3
2,925,143	+	srmB	LU632_RS15440	0.76	-0.4
2,925,210	-	srmB	LU632_RS15440	0.81	-0.5
2,925,210	-	srmB	LU632_RS15440	0.81	+0.4
2,925,210	-	srmB	LU632_RS15440	0.81	-0.8
2,925,210	-	srmB	LU632_RS15440	0.81	-0.2
2,925,210	-	srmB	LU632_RS15440	0.81	-3.0
2,925,469	-				-0.4
2,925,478	+				-0.9
2,925,479	-				+1.3
2,925,479	-				-0.7
2,925,483	+				+0.8
2,925,483	+				-0.5
2,925,578	-				+0.1
2,925,578	-				+0.7
2,925,591	+				-1.3
2,925,591	+				+0.2
2,925,694	+				-1.2
2,925,751	-	tyrA	LU632_RS15445	0.14	-0.4
2,925,790	+	tyrA	LU632_RS15445	0.18	-1.7
2,925,790	+	tyrA	LU632_RS15445	0.18	-0.2
2,925,791	-	tyrA	LU632_RS15445	0.18	-1.3
2,925,791	-	tyrA	LU632_RS15445	0.18	-1.6
2,925,791	-	tyrA	LU632_RS15445	0.18	-1.7
2,925,791	-	tyrA	LU632_RS15445	0.18	-1.0
2,925,791	-	tyrA	LU632_RS15445	0.18	-1.7
2,925,793	+	tyrA	LU632_RS15445	0.18	-0.9
2,925,793	+	tyrA	LU632_RS15445	0.18	-1.6
2,925,793	+	tyrA	LU632_RS15445	0.18	-1.2
2,925,793	+	tyrA	LU632_RS15445	0.18	-0.8
2,925,794	-	tyrA	LU632_RS15445	0.18	-1.8
2,925,794	-	tyrA	LU632_RS15445	0.18	-0.5
2,925,805	-	tyrA	LU632_RS15445	0.19	-1.6
2,926,002	-	tyrA	LU632_RS15445	0.37	-2.3
2,926,174	+	tyrA	LU632_RS15445	0.52	-0.2
2,926,204	+	tyrA	LU632_RS15445	0.55	+0.4
2,926,204	+	tyrA	LU632_RS15445	0.55	+0.8
2,926,204	+	tyrA	LU632_RS15445	0.55	-1.6
2,926,205	-	tyrA	LU632_RS15445	0.55	-1.2
2,926,256	+	tyrA	LU632_RS15445	0.59	-1.6
2,926,257	-	tyrA	LU632_RS15445	0.59	-1.3
2,926,257	-	tyrA	LU632_RS15445	0.59	-2.7
2,926,324	+	tyrA	LU632_RS15445	0.65	-0.8
2,926,523	+	tyrA	LU632_RS15445	0.83	-2.3
2,926,524	-	tyrA	LU632_RS15445	0.83	-0.3
2,926,578	+	tyrA	LU632_RS15445	0.88	-0.4
2,926,579	-	tyrA	LU632_RS15445	0.88	-2.4
2,926,604	+				-0.8
2,926,632	-				-2.3
2,926,664	-				-1.8
2,926,711	+				-1.5
2,926,715	+				-1.3
2,926,715	+				-1.2
2,926,716	-				-0.5
2,926,716	-				-0.3
2,926,778	-				-0.6
2,926,843	-		LU632_RS15450	0.12	-0.1
2,926,893	+		LU632_RS15450	0.17	+0.4
2,926,999	+		LU632_RS15450	0.26	-1.3
2,926,999	+		LU632_RS15450	0.26	-1.6
2,927,000	-		LU632_RS15450	0.26	+0.4
2,927,053	+		LU632_RS15450	0.31	-1.4
2,927,054	-		LU632_RS15450	0.31	-0.3
2,927,054	-		LU632_RS15450	0.31	-0.4
2,927,054	-		LU632_RS15450	0.31	+0.8
2,927,054	-		LU632_RS15450	0.31	-0.6
2,927,069	+		LU632_RS15450	0.33	-1.3
2,927,070	-		LU632_RS15450	0.33	-0.4
2,927,097	+		LU632_RS15450	0.35	-0.6
2,927,098	-		LU632_RS15450	0.36	+0.7
2,927,116	-		LU632_RS15450	0.37	-0.3
2,927,235	+		LU632_RS15450	0.48	-1.6
2,927,320	-		LU632_RS15450	0.56	+1.2
2,927,337	-		LU632_RS15450	0.58	-0.9
2,927,416	+		LU632_RS15450	0.65	-1.2
2,927,416	+		LU632_RS15450	0.65	-1.6
2,927,417	-		LU632_RS15450	0.65	+0.0
2,927,436	+		LU632_RS15450	0.67	-2.4
2,927,456	+		LU632_RS15450	0.69	-0.7
2,927,528	+		LU632_RS15450	0.75	-0.6
2,927,528	+		LU632_RS15450	0.75	-0.3
2,927,529	-		LU632_RS15450	0.75	-0.0
2,927,529	-		LU632_RS15450	0.75	+0.7
2,927,529	-		LU632_RS15450	0.75	+1.4
2,927,543	-		LU632_RS15450	0.77	+0.9
2,927,543	-		LU632_RS15450	0.77	-0.9
2,927,577	-		LU632_RS15450	0.80	-0.1