Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14005

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
2,688,156	-				+0.0
2,688,159	+				-0.1
2,688,159	+				-1.0
2,688,160	-				-0.5
2,688,175	+				+0.3
2,688,208	+				+0.2
2,688,215	+				+0.2
2,688,216	-				-1.3
2,688,313	+				-0.0
2,688,408	+		LU632_RS14000	0.15	-1.3
2,688,408	+		LU632_RS14000	0.15	-0.4
2,688,409	-		LU632_RS14000	0.16	+0.2
2,688,409	-		LU632_RS14000	0.16	+1.0
2,688,411	-		LU632_RS14000	0.16	+0.9
2,688,414	+		LU632_RS14000	0.16	+1.4
2,688,414	+		LU632_RS14000	0.16	-1.3
2,688,419	+		LU632_RS14000	0.17	+1.0
2,688,420	-		LU632_RS14000	0.17	+0.9
2,688,420	-		LU632_RS14000	0.17	-0.4
2,688,424	+		LU632_RS14000	0.18	-0.5
2,688,455	-		LU632_RS14000	0.22	+0.0
2,688,679	+		LU632_RS14000	0.52	-0.3
2,688,680	-		LU632_RS14000	0.53	+1.5
2,688,746	+		LU632_RS14000	0.62	+2.1
2,688,747	-		LU632_RS14000	0.62	-1.0
2,688,752	+		LU632_RS14000	0.62	-0.4
2,688,752	+		LU632_RS14000	0.62	+2.6
2,688,753	-		LU632_RS14000	0.63	-0.1
2,688,753	-		LU632_RS14000	0.63	-0.1
2,688,753	-		LU632_RS14000	0.63	-1.0
2,688,830	-		LU632_RS14000	0.73	-1.0
2,688,861	+		LU632_RS14000	0.77	-0.4
2,688,862	-		LU632_RS14000	0.77	+1.3
2,688,876	+		LU632_RS14000	0.79	+0.5
2,688,876	+		LU632_RS14000	0.79	+0.0
2,688,877	-		LU632_RS14000	0.80	-0.1
2,688,877	-		LU632_RS14000	0.80	+1.9
2,688,947	+		LU632_RS14000	0.89	-0.1
2,688,948	-		LU632_RS14000	0.89	-1.1
2,688,965	+				-0.8
2,688,965	+				+0.3
2,688,966	-				+1.3
2,689,025	-				+1.0
2,689,067	+				+0.8
2,689,068	-				+1.0
2,689,188	+				-1.6
2,689,216	+		LU632_RS14005	0.10	+0.8
2,689,223	+		LU632_RS14005	0.11	-1.3
2,689,223	+		LU632_RS14005	0.11	+0.6
2,689,223	+		LU632_RS14005	0.11	+1.3
2,689,224	-		LU632_RS14005	0.12	-0.4
2,689,327	-		LU632_RS14005	0.28	-0.4
2,689,327	-		LU632_RS14005	0.28	+3.0
2,689,327	-		LU632_RS14005	0.28	-2.5
2,689,405	-		LU632_RS14005	0.40	+1.3
2,689,405	-		LU632_RS14005	0.40	+0.0
2,689,514	-		LU632_RS14005	0.57	+0.5
2,689,615	-		LU632_RS14005	0.73	+0.0
2,689,615	-		LU632_RS14005	0.73	+0.2
2,689,618	+		LU632_RS14005	0.74	+0.0
2,689,682	+		LU632_RS14005	0.84	-1.3
2,689,714	+		LU632_RS14005	0.89	-1.1
2,689,715	-		LU632_RS14005	0.89	+0.5
2,689,786	+				-0.0
2,689,787	-				-0.7
2,690,050	-				+0.2
2,690,167	-	ldcA	LU632_RS14010	0.13	+1.0
2,690,167	-	ldcA	LU632_RS14010	0.13	+0.3
2,690,212	-	ldcA	LU632_RS14010	0.18	-0.0
2,690,241	+	ldcA	LU632_RS14010	0.21	+1.0
2,690,242	-	ldcA	LU632_RS14010	0.21	+3.4
2,690,242	-	ldcA	LU632_RS14010	0.21	+1.3
2,690,421	+	ldcA	LU632_RS14010	0.40	-1.3
2,690,422	-	ldcA	LU632_RS14010	0.40	-0.5
2,690,422	-	ldcA	LU632_RS14010	0.40	+1.5
2,690,523	+	ldcA	LU632_RS14010	0.51	-0.3
2,690,564	+	ldcA	LU632_RS14010	0.56	+0.0
2,690,745	+	ldcA	LU632_RS14010	0.75	+0.2
2,690,746	-	ldcA	LU632_RS14010	0.75	-0.5