Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12300

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
2,336,257	+		LU632_RS12295	0.25	-0.4
2,336,325	+		LU632_RS12295	0.31	+0.5
2,336,325	+		LU632_RS12295	0.31	-2.4
2,336,325	+		LU632_RS12295	0.31	-0.2
2,336,325	+		LU632_RS12295	0.31	-0.9
2,336,325	+		LU632_RS12295	0.31	-0.1
2,336,326	-		LU632_RS12295	0.31	-0.6
2,336,326	-		LU632_RS12295	0.31	-1.0
2,336,326	-		LU632_RS12295	0.31	+0.4
2,336,326	-		LU632_RS12295	0.31	-0.3
2,336,326	-		LU632_RS12295	0.31	-1.3
2,336,326	-		LU632_RS12295	0.31	-0.4
2,336,530	+		LU632_RS12295	0.49	-0.1
2,336,634	+		LU632_RS12295	0.58	+1.0
2,336,710	+		LU632_RS12295	0.64	-0.3
2,336,710	+		LU632_RS12295	0.64	-0.0
2,336,728	-		LU632_RS12295	0.66	+0.5
2,336,764	+		LU632_RS12295	0.69	+1.6
2,336,828	-		LU632_RS12295	0.75	+0.6
2,336,920	+		LU632_RS12295	0.83	+0.5
2,336,922	+		LU632_RS12295	0.83	-0.4
2,336,923	-		LU632_RS12295	0.83	-0.8
2,336,923	-		LU632_RS12295	0.83	+1.1
2,336,929	+		LU632_RS12295	0.84	+0.5
2,337,059	+				+0.5
2,337,059	+				+0.2
2,337,059	+				-2.0
2,337,059	+				-0.0
2,337,059	+				-1.8
2,337,059	+				+0.2
2,337,061	+				-0.4
2,337,062	-				-0.4
2,337,062	-				+0.0
2,337,062	-				-0.1
2,337,071	+				+0.7
2,337,072	-				-1.3
2,337,113	+				+1.2
2,337,114	-				-1.3
2,337,160	+				-2.3
2,337,194	+				+0.1
2,337,227	-				+0.5
2,337,267	+	bioD	LU632_RS12300	0.15	-0.3
2,337,282	+	bioD	LU632_RS12300	0.18	+0.8
2,337,297	+	bioD	LU632_RS12300	0.20	-0.6
2,337,298	-	bioD	LU632_RS12300	0.20	-0.8
2,337,312	+	bioD	LU632_RS12300	0.22	+0.3
2,337,313	-	bioD	LU632_RS12300	0.22	+0.6
2,337,313	-	bioD	LU632_RS12300	0.22	+0.6
2,337,409	+	bioD	LU632_RS12300	0.37	+0.2
2,337,550	+	bioD	LU632_RS12300	0.58	-0.4
2,337,550	+	bioD	LU632_RS12300	0.58	-2.5
2,337,659	-	bioD	LU632_RS12300	0.74	-0.4
2,337,664	+	bioD	LU632_RS12300	0.75	-0.6
2,337,676	-	bioD	LU632_RS12300	0.76	-0.2
2,337,821	-				-0.4
2,337,821	-				-0.4
2,337,904	-				-0.0
2,337,954	-				-0.8
2,338,109	+				+1.6
2,338,110	-				+0.1
2,338,124	-				-1.6
2,338,320	+		LU632_RS12305	0.20	+0.3
2,338,332	+		LU632_RS12305	0.21	-0.9
2,338,332	+		LU632_RS12305	0.21	+0.7
2,338,332	+		LU632_RS12305	0.21	+1.9
2,338,332	+		LU632_RS12305	0.21	+1.0
2,338,332	+		LU632_RS12305	0.21	+0.6
2,338,332	+		LU632_RS12305	0.21	+2.4
2,338,332	+		LU632_RS12305	0.21	-2.7
2,338,333	-		LU632_RS12305	0.21	-0.6
2,338,333	-		LU632_RS12305	0.21	-0.2
2,338,333	-		LU632_RS12305	0.21	-1.6
2,338,333	-		LU632_RS12305	0.21	+0.3
2,338,333	-		LU632_RS12305	0.21	+1.1
2,338,333	-		LU632_RS12305	0.21	+0.1
2,338,334	+		LU632_RS12305	0.22	-1.0
2,338,334	+		LU632_RS12305	0.22	+1.0
2,338,334	+		LU632_RS12305	0.22	-0.1
2,338,354	-		LU632_RS12305	0.23	-0.4
2,338,393	+		LU632_RS12305	0.26	+0.1
2,338,393	+		LU632_RS12305	0.26	+1.2
2,338,394	-		LU632_RS12305	0.26	-0.1
2,338,472	-		LU632_RS12305	0.33	-0.4
2,338,473	+		LU632_RS12305	0.33	-0.8
2,338,521	-		LU632_RS12305	0.37	-1.4
2,338,721	+		LU632_RS12305	0.53	+0.5
2,338,765	+		LU632_RS12305	0.57	-0.8
2,338,765	+		LU632_RS12305	0.57	+1.8
2,338,765	+		LU632_RS12305	0.57	+0.4
2,338,766	-		LU632_RS12305	0.57	+0.0
2,338,766	-		LU632_RS12305	0.57	+0.2
2,338,767	+		LU632_RS12305	0.57	+1.0
2,338,767	+		LU632_RS12305	0.57	-0.4
2,338,768	-		LU632_RS12305	0.57	+0.4
2,338,768	-		LU632_RS12305	0.57	-0.4
2,338,768	-		LU632_RS12305	0.57	-0.3
2,338,768	-		LU632_RS12305	0.57	-0.3