Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10435

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
1,991,292	-		LU632_RS10430	0.16	-1.0
1,991,352	-		LU632_RS10430	0.22	-1.0
1,991,425	+		LU632_RS10430	0.29	-0.6
1,991,425	+		LU632_RS10430	0.29	-0.7
1,991,425	+		LU632_RS10430	0.29	-1.0
1,991,425	+		LU632_RS10430	0.29	-0.1
1,991,426	+		LU632_RS10430	0.29	-0.4
1,991,426	-		LU632_RS10430	0.29	+1.3
1,991,426	-		LU632_RS10430	0.29	-0.9
1,991,517	+		LU632_RS10430	0.37	-1.3
1,991,517	+		LU632_RS10430	0.37	-2.5
1,991,518	-		LU632_RS10430	0.37	-0.4
1,991,576	+		LU632_RS10430	0.42	-1.6
1,991,597	+		LU632_RS10430	0.44	-1.6
1,991,610	-		LU632_RS10430	0.45	-0.2
1,991,610	-		LU632_RS10430	0.45	-2.3
1,991,610	-		LU632_RS10430	0.45	-0.3
1,991,896	+		LU632_RS10430	0.71	-0.2
1,991,896	+		LU632_RS10430	0.71	-0.0
1,991,899	+		LU632_RS10430	0.72	-2.0
1,991,924	+		LU632_RS10430	0.74	-0.8
1,992,146	-				+1.4
1,992,146	-				-2.7
1,992,146	-				+0.3
1,992,155	-				+0.7
1,992,203	-				+0.6
1,992,242	+				-0.2
1,992,340	-	flgJ	LU632_RS10435	0.14	-0.5
1,992,340	-	flgJ	LU632_RS10435	0.14	-0.5
1,992,409	+	flgJ	LU632_RS10435	0.21	-0.3
1,992,409	+	flgJ	LU632_RS10435	0.21	-0.0
1,992,409	+	flgJ	LU632_RS10435	0.21	+0.2
1,992,410	-	flgJ	LU632_RS10435	0.21	+1.0
1,992,413	+	flgJ	LU632_RS10435	0.22	-0.3
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.2
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.0
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.0
1,992,413	+	flgJ	LU632_RS10435	0.22	+0.5
1,992,413	+	flgJ	LU632_RS10435	0.22	-0.3
1,992,413	+	flgJ	LU632_RS10435	0.22	-0.7
1,992,413	+	flgJ	LU632_RS10435	0.22	+0.9
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.1
1,992,413	+	flgJ	LU632_RS10435	0.22	-0.5
1,992,413	+	flgJ	LU632_RS10435	0.22	-1.7
1,992,413	+	flgJ	LU632_RS10435	0.22	+2.6
1,992,414	-	flgJ	LU632_RS10435	0.22	-0.1
1,992,414	-	flgJ	LU632_RS10435	0.22	-0.6
1,992,414	-	flgJ	LU632_RS10435	0.22	+0.7
1,992,414	-	flgJ	LU632_RS10435	0.22	+0.1
1,992,414	-	flgJ	LU632_RS10435	0.22	-0.6
1,992,414	-	flgJ	LU632_RS10435	0.22	-0.4
1,992,415	+	flgJ	LU632_RS10435	0.22	-0.7
1,992,415	+	flgJ	LU632_RS10435	0.22	-0.1
1,992,416	-	flgJ	LU632_RS10435	0.22	-0.0
1,992,416	-	flgJ	LU632_RS10435	0.22	-0.2
1,992,416	-	flgJ	LU632_RS10435	0.22	-1.8
1,992,416	-	flgJ	LU632_RS10435	0.22	+0.8
1,992,425	+	flgJ	LU632_RS10435	0.23	-0.1
1,992,425	+	flgJ	LU632_RS10435	0.23	+2.0
1,992,560	-	flgJ	LU632_RS10435	0.37	+0.2
1,992,565	+	flgJ	LU632_RS10435	0.38	+1.0
1,992,565	+	flgJ	LU632_RS10435	0.38	+1.7
1,992,661	+	flgJ	LU632_RS10435	0.48	-0.6
1,992,814	+	flgJ	LU632_RS10435	0.64	-0.0
1,992,866	+	flgJ	LU632_RS10435	0.70	-1.3
1,992,911	+	flgJ	LU632_RS10435	0.75	+0.7
1,992,911	+	flgJ	LU632_RS10435	0.75	-0.5
1,992,912	-	flgJ	LU632_RS10435	0.75	-0.4
1,992,920	+	flgJ	LU632_RS10435	0.76	-0.7
1,992,920	+	flgJ	LU632_RS10435	0.76	-0.5
1,992,921	-	flgJ	LU632_RS10435	0.76	-0.3
1,992,941	+	flgJ	LU632_RS10435	0.78	+0.1
1,993,052	+	flgJ	LU632_RS10435	0.90	+0.6
1,993,052	+	flgJ	LU632_RS10435	0.90	-0.7
1,993,053	-	flgJ	LU632_RS10435	0.90	+0.2
1,993,077	+				+1.1
1,993,118	+				-0.0
1,993,118	+				-1.2
1,993,182	+				+0.7
1,993,182	+				-1.3
1,993,183	-				-2.2
1,993,193	-				-0.4
1,993,213	+				-0.3
1,993,213	+				-0.4
1,993,214	-				+0.4
1,993,260	+				-1.3
1,993,260	+				-0.4
1,993,260	+				-0.8
1,993,394	+				+1.3
1,993,394	+				-1.0
1,993,403	+				-0.8
1,993,461	-				-1.8
1,993,469	+				-0.9
1,993,469	+				-1.6
1,993,470	-				-1.7
1,993,473	+				+0.8
1,993,546	-				-0.2
1,993,547	+				-0.6
1,993,587	+	flgK	LU632_RS10440	0.12	-2.3
1,993,679	+	flgK	LU632_RS10440	0.18	+0.8
1,993,866	-	flgK	LU632_RS10440	0.29	-0.7
1,994,061	+	flgK	LU632_RS10440	0.41	-1.7
1,994,062	-	flgK	LU632_RS10440	0.41	-1.1
1,994,063	+	flgK	LU632_RS10440	0.41	+1.6
1,994,064	-	flgK	LU632_RS10440	0.41	-1.8
1,994,064	-	flgK	LU632_RS10440	0.41	-2.8
1,994,064	-	flgK	LU632_RS10440	0.41	+0.0
1,994,109	+	flgK	LU632_RS10440	0.44	-1.0