Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10235

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS10220 and LU632_RS10225 are separated by 17 nucleotidesLU632_RS10225 and LU632_RS10230 overlap by 4 nucleotidesLU632_RS10230 and LU632_RS10235 are separated by 107 nucleotidesLU632_RS10235 and LU632_RS10240 are separated by 346 nucleotidesLU632_RS10240 and LU632_RS10245 are separated by 45 nucleotides LU632_RS10220: LU632_RS10220 - integrase arm-type DNA-binding domain-containing protein, at 1,953,847 to 1,954,824 _RS10220 LU632_RS10225: LU632_RS10225 - IS1 family transposase, at 1,954,842 to 1,955,345 _RS10225 LU632_RS10230: LU632_RS10230 - hypothetical protein, at 1,955,342 to 1,955,359 _RS10230 LU632_RS10235: LU632_RS10235 - TonB-dependent siderophore receptor, at 1,955,467 to 1,957,611 _RS10235 LU632_RS10240: LU632_RS10240 - hypothetical protein, at 1,957,958 to 1,958,125 _RS10240 LU632_RS10245: LU632_RS10245 - hypothetical protein, at 1,958,171 to 1,958,338 _RS10245 Position (kb) 1955 1956 1957 1958Strain fitness (log2 ratio) -2 -1 0 1 2at 1954.508 kb on - strand, within LU632_RS10220at 1954.509 kb on + strand, within LU632_RS10220at 1954.509 kb on + strand, within LU632_RS10220at 1954.510 kb on - strand, within LU632_RS10220at 1954.561 kb on - strand, within LU632_RS10220at 1954.642 kb on - strand, within LU632_RS10220at 1954.647 kb on + strand, within LU632_RS10220at 1954.648 kb on - strand, within LU632_RS10220at 1954.699 kb on - strand, within LU632_RS10220at 1954.772 kb on + strandat 1955.605 kb on + strandat 1955.727 kb on + strand, within LU632_RS10235at 1955.728 kb on - strand, within LU632_RS10235at 1955.733 kb on + strand, within LU632_RS10235at 1955.734 kb on - strand, within LU632_RS10235at 1955.806 kb on - strand, within LU632_RS10235at 1955.807 kb on + strand, within LU632_RS10235at 1955.807 kb on + strand, within LU632_RS10235at 1955.807 kb on + strand, within LU632_RS10235at 1955.807 kb on + strand, within LU632_RS10235at 1955.808 kb on - strand, within LU632_RS10235at 1955.808 kb on - strand, within LU632_RS10235at 1955.863 kb on - strand, within LU632_RS10235at 1955.863 kb on - strand, within LU632_RS10235at 1955.998 kb on - strand, within LU632_RS10235at 1956.048 kb on + strand, within LU632_RS10235at 1956.048 kb on + strand, within LU632_RS10235at 1956.048 kb on + strand, within LU632_RS10235at 1956.049 kb on - strand, within LU632_RS10235at 1956.049 kb on - strand, within LU632_RS10235at 1956.238 kb on + strand, within LU632_RS10235at 1956.238 kb on + strand, within LU632_RS10235at 1956.239 kb on - strand, within LU632_RS10235at 1956.331 kb on + strand, within LU632_RS10235at 1956.373 kb on + strand, within LU632_RS10235at 1956.381 kb on + strand, within LU632_RS10235at 1956.442 kb on + strand, within LU632_RS10235at 1956.443 kb on - strand, within LU632_RS10235at 1956.484 kb on - strand, within LU632_RS10235at 1956.484 kb on - strand, within LU632_RS10235at 1956.504 kb on + strand, within LU632_RS10235at 1956.505 kb on - strand, within LU632_RS10235at 1956.508 kb on + strand, within LU632_RS10235at 1956.508 kb on + strand, within LU632_RS10235at 1956.508 kb on + strand, within LU632_RS10235at 1956.508 kb on + strand, within LU632_RS10235at 1956.508 kb on + strand, within LU632_RS10235at 1956.508 kb on + strand, within LU632_RS10235at 1956.512 kb on + strand, within LU632_RS10235at 1956.512 kb on + strand, within LU632_RS10235at 1956.512 kb on + strand, within LU632_RS10235at 1956.512 kb on + strand, within LU632_RS10235at 1956.512 kb on + strand, within LU632_RS10235at 1956.513 kb on - strand, within LU632_RS10235at 1956.513 kb on - strand, within LU632_RS10235at 1956.513 kb on - strand, within LU632_RS10235at 1956.589 kb on + strand, within LU632_RS10235at 1956.590 kb on - strand, within LU632_RS10235at 1956.590 kb on - strand, within LU632_RS10235at 1956.658 kb on + strand, within LU632_RS10235at 1956.691 kb on - strand, within LU632_RS10235at 1956.691 kb on - strand, within LU632_RS10235at 1956.694 kb on + strand, within LU632_RS10235at 1956.695 kb on - strand, within LU632_RS10235at 1956.695 kb on - strand, within LU632_RS10235at 1956.752 kb on + strand, within LU632_RS10235at 1956.753 kb on - strand, within LU632_RS10235at 1956.794 kb on + strand, within LU632_RS10235at 1956.838 kb on + strand, within LU632_RS10235at 1956.838 kb on + strand, within LU632_RS10235at 1956.838 kb on + strand, within LU632_RS10235at 1956.838 kb on + strand, within LU632_RS10235at 1956.838 kb on + strand, within LU632_RS10235at 1956.838 kb on + strand, within LU632_RS10235at 1956.839 kb on - strand, within LU632_RS10235at 1956.839 kb on - strand, within LU632_RS10235at 1956.850 kb on - strand, within LU632_RS10235at 1956.949 kb on - strand, within LU632_RS10235at 1957.021 kb on - strand, within LU632_RS10235at 1957.026 kb on - strand, within LU632_RS10235at 1957.138 kb on - strand, within LU632_RS10235at 1957.141 kb on + strand, within LU632_RS10235at 1957.148 kb on + strand, within LU632_RS10235at 1957.150 kb on + strand, within LU632_RS10235at 1957.204 kb on + strand, within LU632_RS10235at 1957.204 kb on + strand, within LU632_RS10235at 1957.273 kb on + strand, within LU632_RS10235at 1957.274 kb on - strand, within LU632_RS10235at 1957.274 kb on - strand, within LU632_RS10235at 1957.274 kb on - strand, within LU632_RS10235at 1957.274 kb on - strand, within LU632_RS10235at 1957.310 kb on - strand, within LU632_RS10235at 1957.317 kb on - strand, within LU632_RS10235at 1957.330 kb on + strand, within LU632_RS10235at 1957.394 kb on - strand, within LU632_RS10235at 1957.394 kb on - strand, within LU632_RS10235at 1957.429 kb on + strandat 1957.430 kb on - strandat 1957.431 kb on + strandat 1957.432 kb on - strandat 1957.432 kb on - strandat 1957.555 kb on + strandat 1957.555 kb on + strandat 1957.556 kb on - strandat 1957.556 kb on - strandat 1957.556 kb on - strandat 1958.146 kb on - strandat 1958.233 kb on + strand, within LU632_RS10245at 1958.233 kb on + strand, within LU632_RS10245at 1958.278 kb on + strand, within LU632_RS10245at 1958.279 kb on - strand, within LU632_RS10245at 1958.279 kb on - strand, within LU632_RS10245at 1958.294 kb on - strand, within LU632_RS10245at 1958.367 kb on + strandat 1958.367 kb on + strandat 1958.372 kb on - strandat 1958.379 kb on - strandat 1958.390 kb on + strandat 1958.441 kb on - strandat 1958.441 kb on - strandat 1958.466 kb on - strandat 1958.492 kb on - strandat 1958.492 kb on - strandat 1958.494 kb on + strandat 1958.495 kb on - strandat 1958.495 kb on - strandat 1958.495 kb on - strandat 1958.553 kb on + strandat 1958.567 kb on - strandat 1958.572 kb on - strandat 1958.582 kb on + strandat 1958.582 kb on + strandat 1958.586 kb on + strandat 1958.587 kb on - strandat 1958.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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1,954,508 - LU632_RS10220 0.68 +0.0
1,954,509 + LU632_RS10220 0.68 +0.2
1,954,509 + LU632_RS10220 0.68 -2.7
1,954,510 - LU632_RS10220 0.68 -2.3
1,954,561 - LU632_RS10220 0.73 +0.2
1,954,642 - LU632_RS10220 0.81 -0.6
1,954,647 + LU632_RS10220 0.82 +0.7
1,954,648 - LU632_RS10220 0.82 +0.4
1,954,699 - LU632_RS10220 0.87 -1.0
1,954,772 + +0.2
1,955,605 + -1.0
1,955,727 + LU632_RS10235 0.12 +1.0
1,955,728 - LU632_RS10235 0.12 +1.4
1,955,733 + LU632_RS10235 0.12 -0.6
1,955,734 - LU632_RS10235 0.12 +0.1
1,955,806 - LU632_RS10235 0.16 -0.1
1,955,807 + LU632_RS10235 0.16 +1.3
1,955,807 + LU632_RS10235 0.16 -1.3
1,955,807 + LU632_RS10235 0.16 -1.0
1,955,807 + LU632_RS10235 0.16 -0.6
1,955,808 - LU632_RS10235 0.16 -0.1
1,955,808 - LU632_RS10235 0.16 +1.4
1,955,863 - LU632_RS10235 0.18 +0.8
1,955,863 - LU632_RS10235 0.18 +1.6
1,955,998 - LU632_RS10235 0.25 -0.6
1,956,048 + LU632_RS10235 0.27 +2.6
1,956,048 + LU632_RS10235 0.27 +0.4
1,956,048 + LU632_RS10235 0.27 +0.4
1,956,049 - LU632_RS10235 0.27 -0.9
1,956,049 - LU632_RS10235 0.27 +0.8
1,956,238 + LU632_RS10235 0.36 +0.4
1,956,238 + LU632_RS10235 0.36 -1.7
1,956,239 - LU632_RS10235 0.36 +0.6
1,956,331 + LU632_RS10235 0.40 -1.4
1,956,373 + LU632_RS10235 0.42 +0.1
1,956,381 + LU632_RS10235 0.43 -1.3
1,956,442 + LU632_RS10235 0.45 +2.0
1,956,443 - LU632_RS10235 0.46 -2.0
1,956,484 - LU632_RS10235 0.47 +2.0
1,956,484 - LU632_RS10235 0.47 +0.3
1,956,504 + LU632_RS10235 0.48 +0.0
1,956,505 - LU632_RS10235 0.48 -0.3
1,956,508 + LU632_RS10235 0.49 +1.2
1,956,508 + LU632_RS10235 0.49 +0.5
1,956,508 + LU632_RS10235 0.49 -2.4
1,956,508 + LU632_RS10235 0.49 -0.0
1,956,508 + LU632_RS10235 0.49 -0.8
1,956,508 + LU632_RS10235 0.49 -0.2
1,956,512 + LU632_RS10235 0.49 -1.2
1,956,512 + LU632_RS10235 0.49 +0.7
1,956,512 + LU632_RS10235 0.49 -0.9
1,956,512 + LU632_RS10235 0.49 +0.8
1,956,512 + LU632_RS10235 0.49 +0.2
1,956,513 - LU632_RS10235 0.49 +0.7
1,956,513 - LU632_RS10235 0.49 +0.6
1,956,513 - LU632_RS10235 0.49 +0.1
1,956,589 + LU632_RS10235 0.52 -0.0
1,956,590 - LU632_RS10235 0.52 +0.0
1,956,590 - LU632_RS10235 0.52 -1.0
1,956,658 + LU632_RS10235 0.56 +0.3
1,956,691 - LU632_RS10235 0.57 +0.0
1,956,691 - LU632_RS10235 0.57 +0.6
1,956,694 + LU632_RS10235 0.57 -1.6
1,956,695 - LU632_RS10235 0.57 +0.7
1,956,695 - LU632_RS10235 0.57 +0.2
1,956,752 + LU632_RS10235 0.60 +1.4
1,956,753 - LU632_RS10235 0.60 -0.2
1,956,794 + LU632_RS10235 0.62 +1.0
1,956,838 + LU632_RS10235 0.64 -1.0
1,956,838 + LU632_RS10235 0.64 +0.2
1,956,838 + LU632_RS10235 0.64 -0.2
1,956,838 + LU632_RS10235 0.64 -0.8
1,956,838 + LU632_RS10235 0.64 -1.6
1,956,838 + LU632_RS10235 0.64 +0.0
1,956,839 - LU632_RS10235 0.64 -0.7
1,956,839 - LU632_RS10235 0.64 +0.5
1,956,850 - LU632_RS10235 0.64 -1.2
1,956,949 - LU632_RS10235 0.69 +0.5
1,957,021 - LU632_RS10235 0.72 +0.0
1,957,026 - LU632_RS10235 0.73 -2.0
1,957,138 - LU632_RS10235 0.78 +0.2
1,957,141 + LU632_RS10235 0.78 +0.2
1,957,148 + LU632_RS10235 0.78 +0.3
1,957,150 + LU632_RS10235 0.78 -0.0
1,957,204 + LU632_RS10235 0.81 -1.6
1,957,204 + LU632_RS10235 0.81 -0.6
1,957,273 + LU632_RS10235 0.84 +0.1
1,957,274 - LU632_RS10235 0.84 -1.0
1,957,274 - LU632_RS10235 0.84 +0.2
1,957,274 - LU632_RS10235 0.84 -0.8
1,957,274 - LU632_RS10235 0.84 -0.1
1,957,310 - LU632_RS10235 0.86 +2.0
1,957,317 - LU632_RS10235 0.86 -0.8
1,957,330 + LU632_RS10235 0.87 -0.7
1,957,394 - LU632_RS10235 0.90 -1.3
1,957,394 - LU632_RS10235 0.90 +0.0
1,957,429 + +1.1
1,957,430 - -0.6
1,957,431 + +0.6
1,957,432 - -0.2
1,957,432 - -0.3
1,957,555 + -0.2
1,957,555 + -0.8
1,957,556 - +1.3
1,957,556 - +1.6
1,957,556 - -0.3
1,958,146 - +0.0
1,958,233 + LU632_RS10245 0.37 -0.8
1,958,233 + LU632_RS10245 0.37 -0.6
1,958,278 + LU632_RS10245 0.64 -1.2
1,958,279 - LU632_RS10245 0.64 -0.4
1,958,279 - LU632_RS10245 0.64 -1.1
1,958,294 - LU632_RS10245 0.73 -0.5
1,958,367 + +0.0
1,958,367 + +0.4
1,958,372 - +0.3
1,958,379 - -1.0
1,958,390 + -0.8
1,958,441 - +0.6
1,958,441 - +0.3
1,958,466 - -0.2
1,958,492 - -1.3
1,958,492 - +0.7
1,958,494 + +0.8
1,958,495 - -2.0
1,958,495 - -1.0
1,958,495 - -0.9
1,958,553 + -0.3
1,958,567 - -1.0
1,958,572 - +0.3
1,958,582 + +1.5
1,958,582 + +0.4
1,958,586 + +0.0
1,958,587 - +1.0
1,958,587 - +0.4

Or see this region's nucleotide sequence