Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dld and bglX are separated by 184 nucleotides bglX and LU632_RS09330 are separated by 468 nucleotides
LU632_RS09320: dld - D-lactate dehydrogenase, at 1,761,568 to 1,762,979
dld
LU632_RS09325: bglX - beta-glucosidase BglX, at 1,763,164 to 1,765,461
bglX
LU632_RS09330: LU632_RS09330 - oxygenase MpaB family protein, at 1,765,930 to 1,766,796
_RS09330
Position (kb) 1763
1764
1765
1766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1762.171 kb on - strand, within dld at 1762.298 kb on + strand, within dld at 1762.509 kb on + strand, within dld at 1762.543 kb on - strand, within dld at 1762.687 kb on + strand, within dld at 1762.687 kb on + strand, within dld at 1762.688 kb on - strand, within dld at 1762.688 kb on - strand, within dld at 1762.689 kb on + strand, within dld at 1762.689 kb on + strand, within dld at 1762.689 kb on + strand, within dld at 1762.689 kb on + strand, within dld at 1762.689 kb on + strand, within dld at 1762.689 kb on + strand, within dld at 1762.689 kb on + strand, within dld at 1762.690 kb on - strand, within dld at 1762.690 kb on - strand, within dld at 1762.690 kb on - strand, within dld at 1762.690 kb on - strand, within dld at 1762.690 kb on - strand, within dld at 1762.690 kb on - strand, within dld at 1762.995 kb on - strand at 1762.995 kb on - strand at 1763.015 kb on - strand at 1763.051 kb on - strand at 1763.082 kb on - strand at 1763.089 kb on - strand at 1763.118 kb on + strand at 1763.118 kb on + strand at 1763.129 kb on - strand at 1763.143 kb on + strand at 1763.349 kb on + strand at 1763.402 kb on + strand, within bglX at 1763.694 kb on + strand, within bglX at 1763.801 kb on - strand, within bglX at 1763.832 kb on + strand, within bglX at 1763.833 kb on - strand, within bglX at 1763.928 kb on + strand, within bglX at 1763.929 kb on - strand, within bglX at 1763.929 kb on - strand, within bglX at 1764.109 kb on - strand, within bglX at 1764.112 kb on - strand, within bglX at 1764.112 kb on - strand, within bglX at 1764.112 kb on - strand, within bglX at 1764.118 kb on - strand, within bglX at 1764.138 kb on + strand, within bglX at 1764.143 kb on - strand, within bglX at 1764.223 kb on + strand, within bglX at 1764.251 kb on - strand, within bglX at 1764.346 kb on - strand, within bglX at 1764.346 kb on - strand, within bglX at 1764.589 kb on - strand, within bglX at 1764.605 kb on + strand, within bglX at 1764.606 kb on - strand, within bglX at 1764.897 kb on + strand, within bglX at 1764.903 kb on + strand, within bglX at 1764.903 kb on + strand, within bglX at 1764.903 kb on + strand, within bglX at 1764.904 kb on - strand, within bglX at 1764.928 kb on + strand, within bglX at 1764.928 kb on + strand, within bglX at 1764.929 kb on - strand, within bglX at 1764.929 kb on - strand, within bglX at 1764.929 kb on - strand, within bglX at 1764.991 kb on + strand, within bglX at 1765.018 kb on + strand, within bglX at 1765.039 kb on - strand, within bglX at 1765.042 kb on + strand, within bglX at 1765.043 kb on - strand, within bglX at 1765.043 kb on - strand, within bglX at 1765.044 kb on + strand, within bglX at 1765.044 kb on + strand, within bglX at 1765.044 kb on + strand, within bglX at 1765.044 kb on + strand, within bglX at 1765.105 kb on + strand, within bglX at 1765.105 kb on + strand, within bglX at 1765.105 kb on + strand, within bglX at 1765.105 kb on + strand, within bglX at 1765.106 kb on - strand, within bglX at 1765.116 kb on - strand, within bglX at 1765.131 kb on + strand, within bglX at 1765.132 kb on - strand, within bglX at 1765.257 kb on + strand at 1765.296 kb on + strand at 1765.297 kb on - strand at 1765.297 kb on - strand at 1765.297 kb on - strand at 1765.338 kb on - strand at 1765.402 kb on - strand at 1765.473 kb on + strand at 1765.473 kb on + strand at 1765.474 kb on - strand at 1765.474 kb on - strand at 1765.479 kb on + strand at 1765.523 kb on - strand at 1765.523 kb on - strand at 1765.623 kb on + strand at 1765.650 kb on + strand at 1765.651 kb on - strand at 1765.651 kb on - strand at 1765.651 kb on - strand at 1765.693 kb on + strand at 1765.693 kb on + strand at 1765.694 kb on - strand at 1765.770 kb on + strand at 1765.770 kb on + strand at 1765.810 kb on + strand at 1765.810 kb on + strand at 1765.811 kb on - strand at 1765.811 kb on - strand at 1765.842 kb on + strand at 1765.843 kb on - strand at 1765.843 kb on - strand at 1765.857 kb on + strand at 1765.857 kb on + strand at 1765.899 kb on + strand at 1765.917 kb on - strand at 1765.950 kb on + strand at 1765.952 kb on + strand at 1765.952 kb on + strand at 1765.952 kb on + strand at 1766.046 kb on + strand, within LU632_RS09330 at 1766.111 kb on + strand, within LU632_RS09330 at 1766.111 kb on + strand, within LU632_RS09330 at 1766.283 kb on - strand, within LU632_RS09330 at 1766.384 kb on + strand, within LU632_RS09330 at 1766.385 kb on - strand, within LU632_RS09330 at 1766.385 kb on - strand, within LU632_RS09330 at 1766.429 kb on - strand, within LU632_RS09330 at 1766.431 kb on + strand, within LU632_RS09330 at 1766.432 kb on - strand, within LU632_RS09330
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 1,762,171 - dld LU632_RS09320 0.43 -0.0 1,762,298 + dld LU632_RS09320 0.52 -0.3 1,762,509 + dld LU632_RS09320 0.67 +0.0 1,762,543 - dld LU632_RS09320 0.69 +1.5 1,762,687 + dld LU632_RS09320 0.79 -0.5 1,762,687 + dld LU632_RS09320 0.79 +0.8 1,762,688 - dld LU632_RS09320 0.79 +0.5 1,762,688 - dld LU632_RS09320 0.79 -1.9 1,762,689 + dld LU632_RS09320 0.79 +1.9 1,762,689 + dld LU632_RS09320 0.79 +0.5 1,762,689 + dld LU632_RS09320 0.79 -0.4 1,762,689 + dld LU632_RS09320 0.79 +1.0 1,762,689 + dld LU632_RS09320 0.79 -0.4 1,762,689 + dld LU632_RS09320 0.79 +0.4 1,762,689 + dld LU632_RS09320 0.79 -0.1 1,762,690 - dld LU632_RS09320 0.79 +0.3 1,762,690 - dld LU632_RS09320 0.79 +1.0 1,762,690 - dld LU632_RS09320 0.79 -0.0 1,762,690 - dld LU632_RS09320 0.79 +0.4 1,762,690 - dld LU632_RS09320 0.79 +3.9 1,762,690 - dld LU632_RS09320 0.79 -0.9 1,762,995 - +0.4 1,762,995 - +0.4 1,763,015 - +2.2 1,763,051 - -0.7 1,763,082 - +0.3 1,763,089 - +0.8 1,763,118 + +0.2 1,763,118 + +2.1 1,763,129 - -2.9 1,763,143 + +0.0 1,763,349 + +0.5 1,763,402 + bglX LU632_RS09325 0.10 +0.2 1,763,694 + bglX LU632_RS09325 0.23 +1.1 1,763,801 - bglX LU632_RS09325 0.28 +0.0 1,763,832 + bglX LU632_RS09325 0.29 -0.2 1,763,833 - bglX LU632_RS09325 0.29 -0.5 1,763,928 + bglX LU632_RS09325 0.33 -0.8 1,763,929 - bglX LU632_RS09325 0.33 +0.4 1,763,929 - bglX LU632_RS09325 0.33 -0.7 1,764,109 - bglX LU632_RS09325 0.41 +1.5 1,764,112 - bglX LU632_RS09325 0.41 +0.4 1,764,112 - bglX LU632_RS09325 0.41 -0.6 1,764,112 - bglX LU632_RS09325 0.41 -0.6 1,764,118 - bglX LU632_RS09325 0.42 +0.7 1,764,138 + bglX LU632_RS09325 0.42 +0.9 1,764,143 - bglX LU632_RS09325 0.43 -0.3 1,764,223 + bglX LU632_RS09325 0.46 +0.4 1,764,251 - bglX LU632_RS09325 0.47 +0.5 1,764,346 - bglX LU632_RS09325 0.51 -0.7 1,764,346 - bglX LU632_RS09325 0.51 +0.5 1,764,589 - bglX LU632_RS09325 0.62 -1.9 1,764,605 + bglX LU632_RS09325 0.63 -1.2 1,764,606 - bglX LU632_RS09325 0.63 +2.8 1,764,897 + bglX LU632_RS09325 0.75 -0.5 1,764,903 + bglX LU632_RS09325 0.76 +1.4 1,764,903 + bglX LU632_RS09325 0.76 -1.0 1,764,903 + bglX LU632_RS09325 0.76 -2.5 1,764,904 - bglX LU632_RS09325 0.76 -0.2 1,764,928 + bglX LU632_RS09325 0.77 -0.4 1,764,928 + bglX LU632_RS09325 0.77 +0.3 1,764,929 - bglX LU632_RS09325 0.77 -0.9 1,764,929 - bglX LU632_RS09325 0.77 +0.9 1,764,929 - bglX LU632_RS09325 0.77 +0.1 1,764,991 + bglX LU632_RS09325 0.80 -0.9 1,765,018 + bglX LU632_RS09325 0.81 -1.7 1,765,039 - bglX LU632_RS09325 0.82 -0.0 1,765,042 + bglX LU632_RS09325 0.82 +0.3 1,765,043 - bglX LU632_RS09325 0.82 +0.2 1,765,043 - bglX LU632_RS09325 0.82 +1.1 1,765,044 + bglX LU632_RS09325 0.82 -0.4 1,765,044 + bglX LU632_RS09325 0.82 +1.0 1,765,044 + bglX LU632_RS09325 0.82 -0.7 1,765,044 + bglX LU632_RS09325 0.82 +1.1 1,765,105 + bglX LU632_RS09325 0.84 +0.6 1,765,105 + bglX LU632_RS09325 0.84 -1.5 1,765,105 + bglX LU632_RS09325 0.84 -1.0 1,765,105 + bglX LU632_RS09325 0.84 +0.5 1,765,106 - bglX LU632_RS09325 0.85 +0.6 1,765,116 - bglX LU632_RS09325 0.85 -0.3 1,765,131 + bglX LU632_RS09325 0.86 +1.4 1,765,132 - bglX LU632_RS09325 0.86 +1.0 1,765,257 + +0.1 1,765,296 + -0.7 1,765,297 - -0.0 1,765,297 - +1.3 1,765,297 - +2.6 1,765,338 - +0.8 1,765,402 - +0.0 1,765,473 + -1.0 1,765,473 + -0.5 1,765,474 - -0.1 1,765,474 - -0.5 1,765,479 + +0.4 1,765,523 - -0.0 1,765,523 - -0.4 1,765,623 + -1.1 1,765,650 + -0.0 1,765,651 - +0.2 1,765,651 - -1.2 1,765,651 - -0.3 1,765,693 + -0.1 1,765,693 + -0.5 1,765,694 - +0.0 1,765,770 + +0.6 1,765,770 + +0.1 1,765,810 + +0.6 1,765,810 + -0.5 1,765,811 - -0.6 1,765,811 - +0.2 1,765,842 + -0.7 1,765,843 - +1.4 1,765,843 - +0.8 1,765,857 + -0.7 1,765,857 + -0.9 1,765,899 + +0.5 1,765,917 - -0.4 1,765,950 + +0.8 1,765,952 + +1.1 1,765,952 + +0.2 1,765,952 + -0.3 1,766,046 + LU632_RS09330 0.13 -1.9 1,766,111 + LU632_RS09330 0.21 +0.3 1,766,111 + LU632_RS09330 0.21 +0.9 1,766,283 - LU632_RS09330 0.41 -1.7 1,766,384 + LU632_RS09330 0.52 +0.0 1,766,385 - LU632_RS09330 0.52 +0.3 1,766,385 - LU632_RS09330 0.52 -0.4 1,766,429 - LU632_RS09330 0.58 -0.9 1,766,431 + LU632_RS09330 0.58 +0.8 1,766,432 - LU632_RS09330 0.58 +1.3
Or see this region's nucleotide sequence