Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhlE and dusC are separated by 56 nucleotides dusC and LU632_RS09225 are separated by 198 nucleotides
LU632_RS09215: rhlE - ATP-dependent RNA helicase RhlE, at 1,735,521 to 1,736,927
rhlE
LU632_RS09220: dusC - tRNA dihydrouridine(16) synthase DusC, at 1,736,984 to 1,737,925
dusC
LU632_RS09225: LU632_RS09225 - MFS transporter, at 1,738,124 to 1,739,305
_RS09225
Position (kb) 1736
1737
1738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1736.103 kb on - strand, within rhlE at 1736.103 kb on - strand, within rhlE at 1736.130 kb on - strand, within rhlE at 1736.270 kb on - strand, within rhlE at 1736.319 kb on - strand, within rhlE at 1736.450 kb on + strand, within rhlE at 1736.450 kb on + strand, within rhlE at 1736.450 kb on + strand, within rhlE at 1736.478 kb on + strand, within rhlE at 1736.479 kb on - strand, within rhlE at 1736.479 kb on - strand, within rhlE at 1736.505 kb on + strand, within rhlE at 1736.506 kb on - strand, within rhlE at 1736.506 kb on - strand, within rhlE at 1736.509 kb on + strand, within rhlE at 1736.510 kb on - strand, within rhlE at 1736.582 kb on + strand, within rhlE at 1736.598 kb on - strand, within rhlE at 1736.667 kb on - strand, within rhlE at 1736.926 kb on - strand at 1737.060 kb on - strand at 1737.493 kb on + strand, within dusC at 1737.562 kb on + strand, within dusC at 1737.620 kb on - strand, within dusC at 1737.670 kb on + strand, within dusC at 1737.689 kb on - strand, within dusC at 1737.802 kb on + strand, within dusC at 1737.803 kb on - strand, within dusC at 1737.901 kb on + strand at 1737.902 kb on - strand at 1737.934 kb on - strand at 1737.964 kb on + strand at 1737.965 kb on - strand at 1738.085 kb on - strand at 1738.171 kb on + strand at 1738.171 kb on + strand at 1738.241 kb on + strand at 1738.301 kb on + strand, within LU632_RS09225 at 1738.537 kb on + strand, within LU632_RS09225 at 1738.687 kb on - strand, within LU632_RS09225 at 1738.772 kb on - strand, within LU632_RS09225
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 1,736,103 - rhlE LU632_RS09215 0.41 -0.5 1,736,103 - rhlE LU632_RS09215 0.41 -1.1 1,736,130 - rhlE LU632_RS09215 0.43 +1.8 1,736,270 - rhlE LU632_RS09215 0.53 -1.1 1,736,319 - rhlE LU632_RS09215 0.57 +0.2 1,736,450 + rhlE LU632_RS09215 0.66 -1.4 1,736,450 + rhlE LU632_RS09215 0.66 -0.3 1,736,450 + rhlE LU632_RS09215 0.66 -0.0 1,736,478 + rhlE LU632_RS09215 0.68 -2.2 1,736,479 - rhlE LU632_RS09215 0.68 -1.2 1,736,479 - rhlE LU632_RS09215 0.68 -1.3 1,736,505 + rhlE LU632_RS09215 0.70 -0.6 1,736,506 - rhlE LU632_RS09215 0.70 +0.3 1,736,506 - rhlE LU632_RS09215 0.70 -1.8 1,736,509 + rhlE LU632_RS09215 0.70 +1.2 1,736,510 - rhlE LU632_RS09215 0.70 +0.7 1,736,582 + rhlE LU632_RS09215 0.75 -0.9 1,736,598 - rhlE LU632_RS09215 0.77 +1.9 1,736,667 - rhlE LU632_RS09215 0.81 -3.3 1,736,926 - +0.9 1,737,060 - +1.8 1,737,493 + dusC LU632_RS09220 0.54 -1.0 1,737,562 + dusC LU632_RS09220 0.61 +0.6 1,737,620 - dusC LU632_RS09220 0.68 -0.5 1,737,670 + dusC LU632_RS09220 0.73 +0.5 1,737,689 - dusC LU632_RS09220 0.75 -1.4 1,737,802 + dusC LU632_RS09220 0.87 +0.4 1,737,803 - dusC LU632_RS09220 0.87 +1.0 1,737,901 + +0.4 1,737,902 - +0.4 1,737,934 - +0.1 1,737,964 + -0.5 1,737,965 - +0.8 1,738,085 - +0.6 1,738,171 + -0.3 1,738,171 + -0.1 1,738,241 + +0.4 1,738,301 + LU632_RS09225 0.15 +0.4 1,738,537 + LU632_RS09225 0.35 -0.3 1,738,687 - LU632_RS09225 0.48 +0.7 1,738,772 - LU632_RS09225 0.55 -1.1
Or see this region's nucleotide sequence