Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08790

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
1,652,403	+				-0.9
1,652,431	+				-3.7
1,652,432	-				-0.9
1,652,518	-		LU632_RS08785	0.14	-0.1
1,652,632	-		LU632_RS08785	0.26	-1.9
1,652,660	-		LU632_RS08785	0.29	-0.3
1,652,728	-		LU632_RS08785	0.37	-1.2
1,652,768	-		LU632_RS08785	0.41	-0.8
1,652,782	-		LU632_RS08785	0.43	-1.4
1,652,784	+		LU632_RS08785	0.43	-2.2
1,652,855	-		LU632_RS08785	0.51	+0.9
1,652,897	+		LU632_RS08785	0.55	-1.6
1,653,028	+		LU632_RS08785	0.70	-1.8
1,653,028	+		LU632_RS08785	0.70	-1.4
1,653,037	-		LU632_RS08785	0.71	-0.4
1,653,103	-		LU632_RS08785	0.78	-1.2
1,653,136	-		LU632_RS08785	0.82	-1.3
1,653,140	-		LU632_RS08785	0.82	-0.9
1,653,140	-		LU632_RS08785	0.82	-0.9
1,653,209	+		LU632_RS08785	0.90	-1.5
1,653,353	+				-1.6
1,653,354	-				-2.8
1,653,439	+				-1.9
1,653,474	+		LU632_RS08790	0.12	+0.0
1,653,616	-		LU632_RS08790	0.24	-1.3
1,653,616	-		LU632_RS08790	0.24	+0.3
1,653,620	-		LU632_RS08790	0.24	-3.6
1,653,650	-		LU632_RS08790	0.27	-2.3
1,653,714	+		LU632_RS08790	0.33	-1.6
1,653,736	-		LU632_RS08790	0.35	-1.4
1,653,779	-		LU632_RS08790	0.39	-1.7
1,653,962	+		LU632_RS08790	0.55	-0.6
1,654,144	+		LU632_RS08790	0.71	-0.1
1,654,184	-		LU632_RS08790	0.74	-3.3
1,654,303	-		LU632_RS08790	0.85	-1.4
1,654,307	-		LU632_RS08790	0.85	-1.5
1,654,392	-				-0.2
1,654,395	-				+0.1
1,654,404	-				-2.0
1,654,405	+				-0.9
1,654,411	+				-1.6
1,654,411	+				-0.6
1,654,412	-				-2.8
1,654,413	+				-1.4
1,654,414	-				-2.2
1,654,581	+				+0.7
1,654,581	+				-0.7
1,654,581	+				-1.9
1,654,582	-				+0.3
1,654,582	-				+0.4
1,654,649	+		LU632_RS08795	0.15	+0.2
1,654,649	+		LU632_RS08795	0.15	+1.3
1,654,649	+		LU632_RS08795	0.15	-0.4
1,654,649	+		LU632_RS08795	0.15	+1.3
1,654,649	+		LU632_RS08795	0.15	+0.2
1,654,650	-		LU632_RS08795	0.15	+0.9
1,654,650	-		LU632_RS08795	0.15	-0.3
1,654,650	-		LU632_RS08795	0.15	-0.1
1,654,650	-		LU632_RS08795	0.15	+0.8
1,654,650	-		LU632_RS08795	0.15	+0.3
1,654,650	-		LU632_RS08795	0.15	+0.3
1,654,650	-		LU632_RS08795	0.15	+0.1
1,654,650	-		LU632_RS08795	0.15	+0.1
1,654,650	-		LU632_RS08795	0.15	+1.5
1,654,650	-		LU632_RS08795	0.15	+2.1
1,654,651	+		LU632_RS08795	0.15	+0.1
1,654,651	+		LU632_RS08795	0.15	+1.3
1,654,651	+		LU632_RS08795	0.15	-1.4
1,654,651	+		LU632_RS08795	0.15	+0.7
1,654,651	+		LU632_RS08795	0.15	+1.1
1,654,652	-		LU632_RS08795	0.15	+0.2
1,654,652	-		LU632_RS08795	0.15	-0.1
1,654,654	-		LU632_RS08795	0.15	-0.6
1,654,654	-		LU632_RS08795	0.15	+0.6
1,654,654	-		LU632_RS08795	0.15	+0.4
1,654,781	-		LU632_RS08795	0.32	+0.8
1,654,781	-		LU632_RS08795	0.32	+1.1
1,655,005	+		LU632_RS08795	0.62	-0.2
1,655,363	+				-0.4
1,655,444	-				-2.0
1,655,449	+				-1.3