Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08315

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
1,563,728	-				-0.4
1,563,731	-				+1.0
1,563,735	+				-1.1
1,563,737	+				-0.4
1,563,738	-				-0.0
1,564,577	+				-0.3
1,564,598	+				+0.4
1,564,636	-				+1.2
1,564,636	-				+0.6
1,564,728	+	bcp	LU632_RS08315	0.13	-1.8
1,564,770	-	bcp	LU632_RS08315	0.22	-1.9
1,564,787	-	bcp	LU632_RS08315	0.26	+0.0
1,564,787	-	bcp	LU632_RS08315	0.26	-1.9
1,564,872	-	bcp	LU632_RS08315	0.44	-1.1
1,564,913	+	bcp	LU632_RS08315	0.53	-4.3
1,564,913	+	bcp	LU632_RS08315	0.53	-0.6
1,564,913	+	bcp	LU632_RS08315	0.53	-3.0
1,564,913	+	bcp	LU632_RS08315	0.53	+1.9
1,564,925	+	bcp	LU632_RS08315	0.56	+3.0
1,564,994	+	bcp	LU632_RS08315	0.70	-1.7
1,564,995	-	bcp	LU632_RS08315	0.71	-0.5
1,565,027	-	bcp	LU632_RS08315	0.77	-1.5
1,565,179	-		LU632_RS08320	0.12	-0.2
1,565,181	+		LU632_RS08320	0.12	+0.7
1,565,182	-		LU632_RS08320	0.12	+0.7
1,565,182	-		LU632_RS08320	0.12	+0.6
1,565,182	-		LU632_RS08320	0.12	+0.2
1,565,198	-		LU632_RS08320	0.15	+0.0
1,565,232	+		LU632_RS08320	0.21	+0.4
1,565,278	-		LU632_RS08320	0.28	+0.4
1,565,278	-		LU632_RS08320	0.28	-0.3
1,565,279	+		LU632_RS08320	0.28	+1.6
1,565,279	+		LU632_RS08320	0.28	-0.7
1,565,279	+		LU632_RS08320	0.28	+0.4
1,565,280	-		LU632_RS08320	0.29	+0.6
1,565,280	-		LU632_RS08320	0.29	+0.1
1,565,338	-		LU632_RS08320	0.38	+0.8
1,565,380	-		LU632_RS08320	0.45	+0.1
1,565,383	-		LU632_RS08320	0.46	+0.8
1,565,443	-		LU632_RS08320	0.56	+0.6
1,565,512	+		LU632_RS08320	0.68	+0.6
1,565,550	+		LU632_RS08320	0.74	+0.9
1,565,550	+		LU632_RS08320	0.74	+0.2
1,565,553	+		LU632_RS08320	0.75	+0.6
1,565,553	+		LU632_RS08320	0.75	-0.2
1,565,554	-		LU632_RS08320	0.75	+0.6
1,565,560	-		LU632_RS08320	0.76	-0.3
1,565,575	+		LU632_RS08320	0.78	+0.6
1,565,598	+		LU632_RS08320	0.82	-0.4
1,565,613	+		LU632_RS08320	0.85	-1.5
1,565,634	+		LU632_RS08320	0.88	-0.4
1,565,673	+				-0.3
1,565,673	+				-1.6
1,565,674	-				-0.5
1,565,726	-				+0.1
1,565,733	-				-0.2
1,565,750	+				+0.1
1,565,756	-				-1.0
1,565,761	+				-1.4