Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06615

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
1,268,577	+				-0.1
1,268,628	-				+1.1
1,268,628	-				-1.2
1,268,628	-				-0.4
1,268,633	-				-1.0
1,268,633	-				-0.4
1,268,644	-				+1.2
1,268,678	+		LU632_RS06605	0.14	-1.6
1,269,089	+	crr	LU632_RS06610	0.16	-2.5
1,269,099	-	crr	LU632_RS06610	0.18	+0.2
1,269,318	-	crr	LU632_RS06610	0.61	-0.0
1,269,318	-	crr	LU632_RS06610	0.61	-2.3
1,269,318	-	crr	LU632_RS06610	0.61	-2.0
1,269,409	-	crr	LU632_RS06610	0.79	-1.3
1,269,523	+				-3.4
1,269,696	+				-2.4
1,269,746	-	ptsI	LU632_RS06615	0.11	-2.1
1,269,750	+	ptsI	LU632_RS06615	0.11	-1.0
1,269,751	-	ptsI	LU632_RS06615	0.11	-1.3
1,269,751	-	ptsI	LU632_RS06615	0.11	-1.8
1,269,863	+	ptsI	LU632_RS06615	0.18	-2.2
1,269,864	-	ptsI	LU632_RS06615	0.18	-2.4
1,269,877	-	ptsI	LU632_RS06615	0.19	-0.7
1,269,906	+	ptsI	LU632_RS06615	0.20	-1.5
1,269,907	-	ptsI	LU632_RS06615	0.20	-1.8
1,269,907	-	ptsI	LU632_RS06615	0.20	-0.8
1,269,907	-	ptsI	LU632_RS06615	0.20	+1.2
1,269,907	-	ptsI	LU632_RS06615	0.20	-1.4
1,269,908	+	ptsI	LU632_RS06615	0.20	-2.4
1,269,908	+	ptsI	LU632_RS06615	0.20	-1.1
1,270,000	-	ptsI	LU632_RS06615	0.26	-0.4
1,270,079	-	ptsI	LU632_RS06615	0.30	-2.5
1,270,084	-	ptsI	LU632_RS06615	0.31	-0.8
1,270,220	-	ptsI	LU632_RS06615	0.38	-1.8
1,270,251	+	ptsI	LU632_RS06615	0.40	-3.7
1,270,253	+	ptsI	LU632_RS06615	0.40	-2.7
1,270,253	+	ptsI	LU632_RS06615	0.40	-3.5
1,270,253	+	ptsI	LU632_RS06615	0.40	-1.6
1,270,292	-	ptsI	LU632_RS06615	0.43	-2.4
1,270,381	-	ptsI	LU632_RS06615	0.48	+1.2
1,270,400	+	ptsI	LU632_RS06615	0.49	-0.4
1,270,401	-	ptsI	LU632_RS06615	0.49	-1.9
1,270,403	-	ptsI	LU632_RS06615	0.49	-1.4
1,270,568	-	ptsI	LU632_RS06615	0.59	-0.8
1,270,605	+	ptsI	LU632_RS06615	0.61	+0.4
1,270,606	-	ptsI	LU632_RS06615	0.61	-1.7
1,270,630	+	ptsI	LU632_RS06615	0.62	-2.2
1,270,716	+	ptsI	LU632_RS06615	0.67	-2.2
1,270,717	-	ptsI	LU632_RS06615	0.67	-2.2
1,270,717	-	ptsI	LU632_RS06615	0.67	-0.4
1,270,771	+	ptsI	LU632_RS06615	0.70	-1.8
1,270,813	+	ptsI	LU632_RS06615	0.73	-3.1
1,271,053	-	ptsI	LU632_RS06615	0.87	-1.5
1,271,053	-	ptsI	LU632_RS06615	0.87	-0.6
1,271,212	+				-2.9
1,271,212	+				-0.4
1,271,380	+				-0.4
1,271,417	+				-2.0
1,271,422	-				+1.2
1,271,422	-				-1.8
1,271,495	-				-0.4
1,271,741	-				-1.2
1,271,759	+				+0.5
1,271,775	-				-0.3
1,271,814	-				-0.2
1,271,814	-				-0.1
1,271,834	-				-1.4
1,271,834	-				-2.1
1,271,939	+				-0.3
1,271,982	+				-0.1
1,272,060	-				-0.6
1,272,094	-				-0.1
1,272,094	-				-1.8
1,272,159	+				-0.9