Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt surE and LU632_RS06470 overlap by 7 nucleotides LU632_RS06470 and nlpD are separated by 143 nucleotides nlpD and rpoS are separated by 50 nucleotides
LU632_RS06465: surE - 5'/3'-nucleotidase SurE, at 1,242,833 to 1,243,594
surE
LU632_RS06470: LU632_RS06470 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 1,243,588 to 1,244,214
_RS06470
LU632_RS06475: nlpD - murein hydrolase activator NlpD, at 1,244,358 to 1,245,473
nlpD
LU632_RS06480: rpoS - RNA polymerase sigma factor RpoS, at 1,245,524 to 1,246,519
rpoS
Position (kb) 1244
1245
1246 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1243.414 kb on + strand, within surE at 1243.592 kb on + strand at 1243.771 kb on + strand, within LU632_RS06470 at 1243.771 kb on + strand, within LU632_RS06470 at 1243.771 kb on + strand, within LU632_RS06470 at 1243.772 kb on - strand, within LU632_RS06470 at 1243.773 kb on + strand, within LU632_RS06470 at 1243.773 kb on + strand, within LU632_RS06470 at 1243.773 kb on + strand, within LU632_RS06470 at 1244.011 kb on + strand, within LU632_RS06470 at 1244.062 kb on - strand, within LU632_RS06470 at 1244.231 kb on + strand at 1244.231 kb on + strand at 1244.279 kb on + strand at 1244.335 kb on + strand at 1244.386 kb on + strand at 1245.486 kb on + strand at 1245.486 kb on + strand at 1245.487 kb on - strand at 1245.523 kb on + strand at 1245.524 kb on - strand at 1245.541 kb on - strand at 1245.547 kb on - strand at 1245.555 kb on + strand at 1245.642 kb on + strand, within rpoS at 1245.784 kb on + strand, within rpoS at 1245.814 kb on + strand, within rpoS at 1245.814 kb on + strand, within rpoS at 1245.815 kb on - strand, within rpoS at 1245.820 kb on - strand, within rpoS at 1245.956 kb on + strand, within rpoS at 1245.982 kb on + strand, within rpoS at 1245.994 kb on + strand, within rpoS at 1245.994 kb on + strand, within rpoS at 1245.995 kb on - strand, within rpoS at 1246.034 kb on - strand, within rpoS at 1246.039 kb on + strand, within rpoS at 1246.059 kb on + strand, within rpoS at 1246.059 kb on + strand, within rpoS at 1246.089 kb on + strand, within rpoS at 1246.169 kb on - strand, within rpoS at 1246.288 kb on + strand, within rpoS at 1246.288 kb on + strand, within rpoS at 1246.289 kb on - strand, within rpoS at 1246.300 kb on + strand, within rpoS at 1246.300 kb on + strand, within rpoS at 1246.368 kb on + strand, within rpoS at 1246.389 kb on + strand, within rpoS at 1246.389 kb on + strand, within rpoS at 1246.390 kb on - strand, within rpoS
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 1,243,414 + surE LU632_RS06465 0.76 -1.1 1,243,592 + -0.2 1,243,771 + LU632_RS06470 0.29 +0.4 1,243,771 + LU632_RS06470 0.29 -0.0 1,243,771 + LU632_RS06470 0.29 -0.8 1,243,772 - LU632_RS06470 0.29 +0.4 1,243,773 + LU632_RS06470 0.30 +1.9 1,243,773 + LU632_RS06470 0.30 +0.6 1,243,773 + LU632_RS06470 0.30 -0.0 1,244,011 + LU632_RS06470 0.67 +2.2 1,244,062 - LU632_RS06470 0.76 +2.8 1,244,231 + +0.3 1,244,231 + +0.8 1,244,279 + +0.5 1,244,335 + -0.6 1,244,386 + -0.8 1,245,486 + +2.1 1,245,486 + +2.9 1,245,487 - +2.0 1,245,523 + +1.9 1,245,524 - +0.8 1,245,541 - +2.2 1,245,547 - +2.7 1,245,555 + +3.3 1,245,642 + rpoS LU632_RS06480 0.12 -0.8 1,245,784 + rpoS LU632_RS06480 0.26 +4.4 1,245,814 + rpoS LU632_RS06480 0.29 +2.4 1,245,814 + rpoS LU632_RS06480 0.29 +2.8 1,245,815 - rpoS LU632_RS06480 0.29 +2.5 1,245,820 - rpoS LU632_RS06480 0.30 +1.4 1,245,956 + rpoS LU632_RS06480 0.43 +3.7 1,245,982 + rpoS LU632_RS06480 0.46 +0.7 1,245,994 + rpoS LU632_RS06480 0.47 +1.4 1,245,994 + rpoS LU632_RS06480 0.47 +3.4 1,245,995 - rpoS LU632_RS06480 0.47 +2.3 1,246,034 - rpoS LU632_RS06480 0.51 +2.5 1,246,039 + rpoS LU632_RS06480 0.52 +1.7 1,246,059 + rpoS LU632_RS06480 0.54 +3.1 1,246,059 + rpoS LU632_RS06480 0.54 +1.7 1,246,089 + rpoS LU632_RS06480 0.57 +3.1 1,246,169 - rpoS LU632_RS06480 0.65 +3.2 1,246,288 + rpoS LU632_RS06480 0.77 +2.8 1,246,288 + rpoS LU632_RS06480 0.77 +1.7 1,246,289 - rpoS LU632_RS06480 0.77 +1.8 1,246,300 + rpoS LU632_RS06480 0.78 +3.5 1,246,300 + rpoS LU632_RS06480 0.78 +2.4 1,246,368 + rpoS LU632_RS06480 0.85 +1.8 1,246,389 + rpoS LU632_RS06480 0.87 +0.5 1,246,389 + rpoS LU632_RS06480 0.87 +2.7 1,246,390 - rpoS LU632_RS06480 0.87 +3.5
Or see this region's nucleotide sequence