Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06420

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
1,233,867	-				+0.2
1,233,867	-				+0.8
1,233,867	-				-0.6
1,233,963	+				-0.9
1,234,008	-				-0.7
1,234,084	+				-1.0
1,234,084	+				-0.1
1,234,087	+				-0.2
1,234,087	+				-0.5
1,234,101	+				+0.7
1,234,105	+				-0.5
1,234,125	+				-0.8
1,234,175	-				-0.2
1,234,177	-				-0.4
1,234,177	-				-0.1
1,234,181	+				-0.5
1,234,250	-		LU632_RS06415	0.11	+0.0
1,234,322	+		LU632_RS06415	0.45	+0.2
1,234,447	+				-0.6
1,234,447	+				+0.7
1,234,447	+				-0.9
1,234,465	+				-0.6
1,234,465	+				-1.6
1,234,465	+				-0.7
1,234,466	-				-0.1
1,234,466	-				-1.0
1,234,466	-				-0.3
1,234,466	-				+1.2
1,234,512	-				-0.3
1,234,514	+				-0.2
1,234,584	-				-1.5
1,234,584	-				-0.5
1,234,723	+				+0.2
1,234,735	-				-0.3
1,234,757	-				-1.1
1,234,778	+				-0.8
1,234,802	-				-0.4
1,234,802	-				+1.6
1,235,040	+	cysG	LU632_RS06420	0.17	-0.6
1,235,127	+	cysG	LU632_RS06420	0.23	+0.8
1,235,128	-	cysG	LU632_RS06420	0.24	+1.5
1,235,139	+	cysG	LU632_RS06420	0.24	+0.5
1,235,139	+	cysG	LU632_RS06420	0.24	-2.0
1,235,140	-	cysG	LU632_RS06420	0.24	-0.6
1,235,140	-	cysG	LU632_RS06420	0.24	+0.2
1,235,140	-	cysG	LU632_RS06420	0.24	+0.2
1,235,140	-	cysG	LU632_RS06420	0.24	-0.2
1,235,210	+	cysG	LU632_RS06420	0.29	-0.8
1,235,302	-	cysG	LU632_RS06420	0.36	+2.0
1,235,344	-	cysG	LU632_RS06420	0.39	+0.6
1,235,344	-	cysG	LU632_RS06420	0.39	-0.2
1,235,505	+	cysG	LU632_RS06420	0.50	-0.5
1,235,707	-	cysG	LU632_RS06420	0.64	-0.8
1,235,733	-	cysG	LU632_RS06420	0.66	-0.8
1,235,755	-	cysG	LU632_RS06420	0.68	-0.8
1,235,807	-	cysG	LU632_RS06420	0.71	+1.0
1,235,935	+	cysG	LU632_RS06420	0.81	-0.8
1,235,935	+	cysG	LU632_RS06420	0.81	+0.1
1,235,935	+	cysG	LU632_RS06420	0.81	-0.3
1,235,935	+	cysG	LU632_RS06420	0.81	-0.3
1,236,108	+				-0.4
1,236,108	+				+0.4
1,236,109	-				-0.6
1,236,109	-				-2.5
1,236,109	-				-0.0
1,236,267	+				-1.0
1,236,267	+				-0.0
1,236,268	-				-0.6
1,236,273	+				+1.9
1,236,319	+	cysD	LU632_RS06425	0.11	+0.1
1,236,320	-	cysD	LU632_RS06425	0.11	-1.5
1,236,320	-	cysD	LU632_RS06425	0.11	-1.1
1,236,363	+	cysD	LU632_RS06425	0.16	-1.1
1,236,363	+	cysD	LU632_RS06425	0.16	-0.1
1,236,401	+	cysD	LU632_RS06425	0.20	+2.5
1,236,402	-	cysD	LU632_RS06425	0.20	+1.2
1,236,402	-	cysD	LU632_RS06425	0.20	-1.0
1,236,402	-	cysD	LU632_RS06425	0.20	-2.1
1,236,559	-	cysD	LU632_RS06425	0.37	-1.0
1,236,595	+	cysD	LU632_RS06425	0.41	-1.1
1,236,664	+	cysD	LU632_RS06425	0.49	-0.0
1,236,726	+	cysD	LU632_RS06425	0.56	-2.6
1,236,727	-	cysD	LU632_RS06425	0.56	-0.6
1,236,730	+	cysD	LU632_RS06425	0.56	-0.1
1,236,730	+	cysD	LU632_RS06425	0.56	-0.4
1,236,730	+	cysD	LU632_RS06425	0.56	-0.1
1,236,730	+	cysD	LU632_RS06425	0.56	-2.0
1,236,730	+	cysD	LU632_RS06425	0.56	+0.3
1,236,731	-	cysD	LU632_RS06425	0.56	-1.5
1,236,731	-	cysD	LU632_RS06425	0.56	+0.3
1,236,731	-	cysD	LU632_RS06425	0.56	-1.6
1,236,748	-	cysD	LU632_RS06425	0.58	-0.4
1,236,825	+	cysD	LU632_RS06425	0.67	+0.0
1,236,844	+	cysD	LU632_RS06425	0.69	-1.4
1,237,143	+				-1.1
1,237,150	-				+0.4