Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05410

Experiment: plant=Melon; plant sample=MP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP3; plant location=NA
1,044,851	-				+0.7
1,044,859	-				+1.8
1,044,859	-				-0.2
1,044,859	-				-1.4
1,044,859	-				-0.1
1,044,992	+				+0.3
1,045,025	+		LU632_RS05405	0.12	-1.1
1,045,026	-		LU632_RS05405	0.12	-0.2
1,045,123	-		LU632_RS05405	0.24	+0.3
1,045,165	+		LU632_RS05405	0.29	-2.4
1,045,184	+		LU632_RS05405	0.31	+1.2
1,045,185	-		LU632_RS05405	0.31	-0.1
1,045,185	-		LU632_RS05405	0.31	-0.0
1,045,185	-		LU632_RS05405	0.31	-0.2
1,045,235	+		LU632_RS05405	0.37	+0.1
1,045,407	+		LU632_RS05405	0.58	-0.7
1,045,407	+		LU632_RS05405	0.58	+0.7
1,045,408	-		LU632_RS05405	0.58	-0.8
1,045,408	-		LU632_RS05405	0.58	+0.7
1,045,460	+		LU632_RS05405	0.64	-0.7
1,045,461	-		LU632_RS05405	0.64	+1.0
1,045,472	+		LU632_RS05405	0.66	-0.3
1,045,630	+		LU632_RS05405	0.85	-0.9
1,045,630	+		LU632_RS05405	0.85	+1.0
1,045,631	-		LU632_RS05405	0.85	+0.9
1,045,631	-		LU632_RS05405	0.85	+1.7
1,045,631	-		LU632_RS05405	0.85	+0.3
1,045,631	-		LU632_RS05405	0.85	-0.4
1,045,635	+		LU632_RS05405	0.86	-0.4
1,045,635	+		LU632_RS05405	0.86	+0.3
1,045,635	+		LU632_RS05405	0.86	+0.7
1,045,635	+		LU632_RS05405	0.86	+0.7
1,045,635	+		LU632_RS05405	0.86	-0.5
1,045,635	+		LU632_RS05405	0.86	+0.4
1,045,636	-		LU632_RS05405	0.86	+1.2
1,045,636	-		LU632_RS05405	0.86	-1.2
1,045,636	-		LU632_RS05405	0.86	-1.1
1,045,636	-		LU632_RS05405	0.86	-1.4
1,045,636	-		LU632_RS05405	0.86	-0.5
1,045,636	-		LU632_RS05405	0.86	+0.3
1,045,637	+		LU632_RS05405	0.86	-0.1
1,045,719	-				+1.0
1,045,756	-				+0.6
1,045,780	+				-1.3
1,045,780	+				-1.0
1,045,781	-				+0.2
1,045,798	+				-0.1
1,045,855	+				-0.0
1,045,855	+				+1.5
1,045,860	+				-2.5
1,045,913	+				+0.7
1,045,913	+				-0.9
1,045,915	+				-1.0
1,045,915	+				-0.3
1,045,915	+				-1.3
1,045,916	-				+1.2
1,045,930	+	mltC	LU632_RS05410	0.10	-1.8
1,045,935	+	mltC	LU632_RS05410	0.10	-1.0
1,045,936	-	mltC	LU632_RS05410	0.11	-1.0
1,045,936	-	mltC	LU632_RS05410	0.11	-1.8
1,046,004	+	mltC	LU632_RS05410	0.17	-0.4
1,046,005	-	mltC	LU632_RS05410	0.17	-1.4
1,046,007	-	mltC	LU632_RS05410	0.17	-0.7
1,046,007	-	mltC	LU632_RS05410	0.17	-2.1
1,046,060	+	mltC	LU632_RS05410	0.22	+0.2
1,046,061	-	mltC	LU632_RS05410	0.22	-0.1
1,046,061	-	mltC	LU632_RS05410	0.22	+0.2
1,046,061	-	mltC	LU632_RS05410	0.22	-1.8
1,046,084	+	mltC	LU632_RS05410	0.24	-0.4
1,046,085	-	mltC	LU632_RS05410	0.24	-1.6
1,046,126	+	mltC	LU632_RS05410	0.28	-0.3
1,046,331	+	mltC	LU632_RS05410	0.47	+0.2
1,046,331	+	mltC	LU632_RS05410	0.47	-0.2
1,046,332	-	mltC	LU632_RS05410	0.47	-1.6
1,046,332	-	mltC	LU632_RS05410	0.47	-0.8
1,046,365	-	mltC	LU632_RS05410	0.50	-0.0
1,046,414	-	mltC	LU632_RS05410	0.55	-1.3
1,046,432	+	mltC	LU632_RS05410	0.56	+0.4
1,046,507	-	mltC	LU632_RS05410	0.63	+0.9
1,046,635	-	mltC	LU632_RS05410	0.75	-1.0
1,046,684	+	mltC	LU632_RS05410	0.80	-0.4
1,046,684	+	mltC	LU632_RS05410	0.80	+0.4
1,046,685	-	mltC	LU632_RS05410	0.80	+0.2
1,046,685	-	mltC	LU632_RS05410	0.80	-0.1
1,046,687	+	mltC	LU632_RS05410	0.80	-0.9
1,046,688	-	mltC	LU632_RS05410	0.80	-1.1
1,046,700	-	mltC	LU632_RS05410	0.81	-1.0
1,046,703	+	mltC	LU632_RS05410	0.82	-0.3
1,046,703	+	mltC	LU632_RS05410	0.82	-1.0
1,046,704	-	mltC	LU632_RS05410	0.82	-0.8
1,046,708	+	mltC	LU632_RS05410	0.82	-0.6
1,046,752	-	mltC	LU632_RS05410	0.86	+0.6
1,046,879	-				-0.5
1,046,904	+				-0.4
1,046,923	+				+0.1
1,046,923	+				+0.1
1,046,970	+				+0.1
1,047,085	-		LU632_RS05415	0.48	-1.1
1,047,085	-		LU632_RS05415	0.48	-0.7
1,047,134	+		LU632_RS05415	0.66	-0.3
1,047,138	+		LU632_RS05415	0.68	+0.9
1,047,138	+		LU632_RS05415	0.68	-2.0
1,047,138	+		LU632_RS05415	0.68	-0.5
1,047,139	-		LU632_RS05415	0.68	-1.1
1,047,226	+				-0.8
1,047,363	-	mutY	LU632_RS05420	0.15	+0.2
1,047,367	+	mutY	LU632_RS05420	0.16	+0.2
1,047,367	+	mutY	LU632_RS05420	0.16	+0.5
1,047,368	-	mutY	LU632_RS05420	0.16	-0.4
1,047,370	-	mutY	LU632_RS05420	0.16	-0.1
1,047,502	+	mutY	LU632_RS05420	0.27	-1.2
1,047,503	-	mutY	LU632_RS05420	0.27	+1.2
1,047,681	+	mutY	LU632_RS05420	0.43	+2.8
1,047,682	-	mutY	LU632_RS05420	0.43	+0.2
1,047,796	+	mutY	LU632_RS05420	0.53	-0.0
1,047,866	-	mutY	LU632_RS05420	0.59	-0.7
1,047,889	+	mutY	LU632_RS05420	0.61	+1.0