Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05060

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05050 and LU632_RS05055 are separated by 304 nucleotidesLU632_RS05055 and LU632_RS05060 overlap by 4 nucleotidesLU632_RS05060 and LU632_RS05065 are separated by 0 nucleotidesLU632_RS05065 and LU632_RS05070 are separated by 56 nucleotides LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585 _RS05050 LU632_RS05055: LU632_RS05055 - TIGR03757 family integrating conjugative element protein, at 985,890 to 986,291 _RS05055 LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345 _RS05060 LU632_RS05065: LU632_RS05065 - helix-turn-helix domain-containing protein, at 987,346 to 987,633 _RS05065 LU632_RS05070: LU632_RS05070 - IS481 family transposase, at 987,690 to 988,730 _RS05070 Position (kb) 986 987 988Strain fitness (log2 ratio) -2 -1 0 1 2at 985.291 kb on - strandat 985.504 kb on + strandat 985.546 kb on - strandat 985.546 kb on - strandat 985.574 kb on + strandat 985.575 kb on - strandat 985.684 kb on + strandat 985.705 kb on + strandat 985.705 kb on + strandat 985.706 kb on - strandat 985.707 kb on + strandat 985.729 kb on - strandat 985.729 kb on - strandat 985.729 kb on - strandat 985.740 kb on + strandat 985.741 kb on - strandat 985.957 kb on + strand, within LU632_RS05055at 985.957 kb on + strand, within LU632_RS05055at 985.957 kb on + strand, within LU632_RS05055at 985.957 kb on + strand, within LU632_RS05055at 985.958 kb on - strand, within LU632_RS05055at 985.958 kb on - strand, within LU632_RS05055at 985.959 kb on + strand, within LU632_RS05055at 985.959 kb on + strand, within LU632_RS05055at 985.959 kb on + strand, within LU632_RS05055at 985.960 kb on - strand, within LU632_RS05055at 985.962 kb on - strand, within LU632_RS05055at 986.161 kb on + strand, within LU632_RS05055at 986.229 kb on + strand, within LU632_RS05055at 986.230 kb on - strand, within LU632_RS05055at 986.431 kb on + strand, within LU632_RS05060at 986.432 kb on - strand, within LU632_RS05060at 986.432 kb on - strand, within LU632_RS05060at 986.502 kb on + strand, within LU632_RS05060at 986.519 kb on - strand, within LU632_RS05060at 986.543 kb on + strand, within LU632_RS05060at 986.543 kb on + strand, within LU632_RS05060at 986.641 kb on - strand, within LU632_RS05060at 986.703 kb on - strand, within LU632_RS05060at 986.796 kb on + strand, within LU632_RS05060at 986.796 kb on + strand, within LU632_RS05060at 986.806 kb on - strand, within LU632_RS05060at 986.823 kb on + strand, within LU632_RS05060at 986.965 kb on - strand, within LU632_RS05060at 986.965 kb on - strand, within LU632_RS05060at 987.073 kb on + strand, within LU632_RS05060at 987.074 kb on - strand, within LU632_RS05060at 987.128 kb on + strand, within LU632_RS05060at 987.129 kb on - strand, within LU632_RS05060at 987.144 kb on + strand, within LU632_RS05060at 987.145 kb on - strand, within LU632_RS05060at 987.149 kb on + strand, within LU632_RS05060at 987.150 kb on - strand, within LU632_RS05060at 987.192 kb on - strand, within LU632_RS05060at 987.197 kb on - strand, within LU632_RS05060at 987.202 kb on + strand, within LU632_RS05060at 987.203 kb on - strand, within LU632_RS05060at 987.203 kb on - strand, within LU632_RS05060at 987.228 kb on + strand, within LU632_RS05060at 987.229 kb on - strand, within LU632_RS05060at 987.344 kb on - strandat 987.351 kb on - strandat 987.356 kb on + strandat 987.375 kb on - strand, within LU632_RS05065at 987.375 kb on - strand, within LU632_RS05065at 987.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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985,291 - -0.3
985,504 + +0.5
985,546 - -0.6
985,546 - -0.9
985,574 + +0.6
985,575 - +0.9
985,684 + -0.0
985,705 + +0.2
985,705 + +0.2
985,706 - -0.9
985,707 + +0.2
985,729 - -0.1
985,729 - -0.4
985,729 - -0.2
985,740 + -0.1
985,741 - -1.9
985,957 + LU632_RS05055 0.17 -0.2
985,957 + LU632_RS05055 0.17 -1.6
985,957 + LU632_RS05055 0.17 +0.2
985,957 + LU632_RS05055 0.17 +2.2
985,958 - LU632_RS05055 0.17 -0.8
985,958 - LU632_RS05055 0.17 +1.1
985,959 + LU632_RS05055 0.17 -0.7
985,959 + LU632_RS05055 0.17 +0.3
985,959 + LU632_RS05055 0.17 -1.4
985,960 - LU632_RS05055 0.17 +0.7
985,962 - LU632_RS05055 0.18 +0.1
986,161 + LU632_RS05055 0.67 +1.5
986,229 + LU632_RS05055 0.84 +0.8
986,230 - LU632_RS05055 0.85 +0.9
986,431 + LU632_RS05060 0.14 +0.6
986,432 - LU632_RS05060 0.14 +0.5
986,432 - LU632_RS05060 0.14 +0.2
986,502 + LU632_RS05060 0.20 +0.2
986,519 - LU632_RS05060 0.22 +0.0
986,543 + LU632_RS05060 0.24 -0.1
986,543 + LU632_RS05060 0.24 -0.4
986,641 - LU632_RS05060 0.33 -0.9
986,703 - LU632_RS05060 0.39 -0.7
986,796 + LU632_RS05060 0.48 -1.3
986,796 + LU632_RS05060 0.48 +0.5
986,806 - LU632_RS05060 0.49 -1.3
986,823 + LU632_RS05060 0.51 -1.9
986,965 - LU632_RS05060 0.64 +1.3
986,965 - LU632_RS05060 0.64 +0.0
987,073 + LU632_RS05060 0.74 -0.6
987,074 - LU632_RS05060 0.74 -1.4
987,128 + LU632_RS05060 0.79 +0.0
987,129 - LU632_RS05060 0.79 -0.3
987,144 + LU632_RS05060 0.81 -0.2
987,145 - LU632_RS05060 0.81 -0.4
987,149 + LU632_RS05060 0.81 +0.5
987,150 - LU632_RS05060 0.81 +2.4
987,192 - LU632_RS05060 0.85 -0.1
987,197 - LU632_RS05060 0.86 +0.3
987,202 + LU632_RS05060 0.86 -1.9
987,203 - LU632_RS05060 0.86 -0.4
987,203 - LU632_RS05060 0.86 -0.6
987,228 + LU632_RS05060 0.89 +0.5
987,229 - LU632_RS05060 0.89 +0.2
987,344 - -1.1
987,351 - +0.6
987,356 + +0.4
987,375 - LU632_RS05065 0.10 -0.2
987,375 - LU632_RS05065 0.10 +0.6
987,638 - -0.8

Or see this region's nucleotide sequence