Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04755

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04750 and LU632_RS04755 overlap by 11 nucleotidesLU632_RS04755 and LU632_RS04760 are separated by 6 nucleotidesLU632_RS04760 and LU632_RS04765 are separated by 48 nucleotides LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996 _RS04750 LU632_RS04755: LU632_RS04755 - TraI domain-containing protein, at 934,986 to 935,738 _RS04755 LU632_RS04760: LU632_RS04760 - DNA-binding domain-containing protein, at 935,745 to 936,566 _RS04760 LU632_RS04765: LU632_RS04765 - site-specific integrase, at 936,615 to 937,624 _RS04765 Position (kb) 934 935 936Strain fitness (log2 ratio) -2 -1 0 1 2 3at 933.993 kb on + strandat 933.994 kb on - strandat 933.997 kb on - strandat 934.067 kb on + strandat 934.068 kb on - strandat 934.070 kb on + strandat 934.286 kb on + strand, within LU632_RS04750at 934.287 kb on - strand, within LU632_RS04750at 934.342 kb on - strand, within LU632_RS04750at 934.350 kb on + strand, within LU632_RS04750at 934.350 kb on + strand, within LU632_RS04750at 934.478 kb on + strand, within LU632_RS04750at 934.479 kb on - strand, within LU632_RS04750at 934.502 kb on - strand, within LU632_RS04750at 934.583 kb on + strand, within LU632_RS04750at 934.649 kb on + strand, within LU632_RS04750at 934.650 kb on - strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.935 kb on + strandat 934.936 kb on - strandat 935.073 kb on + strand, within LU632_RS04755at 935.073 kb on + strand, within LU632_RS04755at 935.074 kb on - strand, within LU632_RS04755at 935.170 kb on + strand, within LU632_RS04755at 935.170 kb on + strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.298 kb on + strand, within LU632_RS04755at 935.322 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.410 kb on - strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.477 kb on - strand, within LU632_RS04755at 935.606 kb on + strand, within LU632_RS04755at 935.660 kb on + strand, within LU632_RS04755at 935.660 kb on + strand, within LU632_RS04755at 935.661 kb on - strand, within LU632_RS04755at 935.716 kb on + strandat 935.912 kb on + strand, within LU632_RS04760at 935.912 kb on + strand, within LU632_RS04760at 935.913 kb on - strand, within LU632_RS04760at 935.913 kb on - strand, within LU632_RS04760at 936.032 kb on + strand, within LU632_RS04760at 936.033 kb on - strand, within LU632_RS04760at 936.123 kb on - strand, within LU632_RS04760at 936.183 kb on - strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.291 kb on - strand, within LU632_RS04760at 936.291 kb on - strand, within LU632_RS04760at 936.291 kb on - strand, within LU632_RS04760at 936.306 kb on - strand, within LU632_RS04760at 936.464 kb on + strand, within LU632_RS04760at 936.496 kb on - strandat 936.500 kb on + strandat 936.612 kb on - strandat 936.628 kb on + strandat 936.629 kb on - strandat 936.696 kb on + strandat 936.697 kb on + strandat 936.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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933,993 + +1.6
933,994 - -0.9
933,997 - -1.2
934,067 + -0.7
934,068 - +0.8
934,070 + +0.5
934,286 + LU632_RS04750 0.11 -0.8
934,287 - LU632_RS04750 0.11 -1.6
934,342 - LU632_RS04750 0.18 -0.1
934,350 + LU632_RS04750 0.19 -2.1
934,350 + LU632_RS04750 0.19 +0.4
934,478 + LU632_RS04750 0.35 -0.9
934,479 - LU632_RS04750 0.35 -0.6
934,502 - LU632_RS04750 0.38 -1.0
934,583 + LU632_RS04750 0.48 -0.8
934,649 + LU632_RS04750 0.56 -0.2
934,650 - LU632_RS04750 0.56 +0.2
934,847 + LU632_RS04750 0.81 +0.0
934,847 + LU632_RS04750 0.81 +0.1
934,847 + LU632_RS04750 0.81 -0.2
934,847 + LU632_RS04750 0.81 +0.3
934,848 - LU632_RS04750 0.81 -1.0
934,848 - LU632_RS04750 0.81 +0.3
934,848 - LU632_RS04750 0.81 +0.2
934,935 + +0.2
934,936 - -1.6
935,073 + LU632_RS04755 0.12 -0.1
935,073 + LU632_RS04755 0.12 -1.0
935,074 - LU632_RS04755 0.12 +0.0
935,170 + LU632_RS04755 0.24 -1.8
935,170 + LU632_RS04755 0.24 -0.4
935,171 - LU632_RS04755 0.25 -1.1
935,171 - LU632_RS04755 0.25 +0.4
935,171 - LU632_RS04755 0.25 -0.8
935,298 + LU632_RS04755 0.41 +0.5
935,322 + LU632_RS04755 0.45 -0.5
935,324 + LU632_RS04755 0.45 +0.1
935,324 + LU632_RS04755 0.45 -1.3
935,324 + LU632_RS04755 0.45 +0.1
935,324 + LU632_RS04755 0.45 +0.4
935,325 - LU632_RS04755 0.45 -0.4
935,325 - LU632_RS04755 0.45 +0.2
935,325 - LU632_RS04755 0.45 -0.8
935,325 - LU632_RS04755 0.45 -0.4
935,325 - LU632_RS04755 0.45 -1.0
935,325 - LU632_RS04755 0.45 -1.6
935,325 - LU632_RS04755 0.45 -1.8
935,410 - LU632_RS04755 0.56 -1.5
935,476 + LU632_RS04755 0.65 +0.8
935,476 + LU632_RS04755 0.65 +0.2
935,476 + LU632_RS04755 0.65 -0.4
935,476 + LU632_RS04755 0.65 -1.1
935,477 - LU632_RS04755 0.65 -0.1
935,606 + LU632_RS04755 0.82 -1.4
935,660 + LU632_RS04755 0.90 +0.6
935,660 + LU632_RS04755 0.90 +0.5
935,661 - LU632_RS04755 0.90 +0.2
935,716 + -1.6
935,912 + LU632_RS04760 0.20 -1.2
935,912 + LU632_RS04760 0.20 +0.5
935,913 - LU632_RS04760 0.20 +0.1
935,913 - LU632_RS04760 0.20 -1.1
936,032 + LU632_RS04760 0.35 +0.1
936,033 - LU632_RS04760 0.35 -0.6
936,123 - LU632_RS04760 0.46 -0.4
936,183 - LU632_RS04760 0.53 -0.8
936,290 + LU632_RS04760 0.66 +0.3
936,290 + LU632_RS04760 0.66 +0.7
936,290 + LU632_RS04760 0.66 -0.4
936,290 + LU632_RS04760 0.66 +0.7
936,290 + LU632_RS04760 0.66 -1.4
936,290 + LU632_RS04760 0.66 -0.2
936,290 + LU632_RS04760 0.66 -0.3
936,290 + LU632_RS04760 0.66 +1.5
936,290 + LU632_RS04760 0.66 -0.1
936,291 - LU632_RS04760 0.66 -1.7
936,291 - LU632_RS04760 0.66 +0.6
936,291 - LU632_RS04760 0.66 -0.2
936,306 - LU632_RS04760 0.68 +0.5
936,464 + LU632_RS04760 0.87 -0.5
936,496 - +0.0
936,500 + -0.6
936,612 - -0.3
936,628 + +0.4
936,629 - +2.0
936,696 + +3.0
936,697 + -0.9
936,697 - -0.2

Or see this region's nucleotide sequence