Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03885 and LU632_RS03890 are separated by 526 nucleotides LU632_RS03890 and LU632_RS03895 are separated by 660 nucleotides
LU632_RS03885: LU632_RS03885 - serine/threonine protein kinase, at 776,642 to 778,027
_RS03885
LU632_RS03890: LU632_RS03890 - hypothetical protein, at 778,554 to 778,820
_RS03890
LU632_RS03895: LU632_RS03895 - hypothetical protein, at 779,481 to 780,248
_RS03895
Position (kb) 778
779 Strain fitness (log2 ratio) -1
0
1
2 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.830 kb on + strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.831 kb on - strand, within LU632_RS03885 at 777.899 kb on - strand at 777.982 kb on + strand at 778.055 kb on + strand at 778.056 kb on - strand at 778.056 kb on - strand at 778.080 kb on + strand at 778.127 kb on + strand at 778.127 kb on + strand at 778.128 kb on - strand at 778.146 kb on + strand at 778.146 kb on + strand at 778.149 kb on - strand at 778.149 kb on - strand at 778.277 kb on + strand at 778.278 kb on - strand at 778.278 kb on - strand at 778.289 kb on + strand at 778.353 kb on - strand at 778.409 kb on + strand at 778.409 kb on + strand at 778.409 kb on + strand at 778.410 kb on - strand at 778.413 kb on - strand at 778.413 kb on - strand at 778.552 kb on + strand at 778.567 kb on + strand at 778.568 kb on - strand at 778.568 kb on - strand at 778.782 kb on - strand, within LU632_RS03890 at 779.099 kb on - strand at 779.185 kb on - strand at 779.185 kb on - strand at 779.425 kb on - strand at 779.446 kb on + strand at 779.455 kb on + strand at 779.492 kb on + strand at 779.492 kb on + strand at 779.492 kb on + strand at 779.493 kb on - strand at 779.685 kb on + strand, within LU632_RS03895 at 779.688 kb on - strand, within LU632_RS03895 at 779.715 kb on + strand, within LU632_RS03895 at 779.717 kb on + strand, within LU632_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 777,830 + LU632_RS03885 0.86 -0.2 777,830 + LU632_RS03885 0.86 +1.3 777,830 + LU632_RS03885 0.86 +1.9 777,830 + LU632_RS03885 0.86 +1.0 777,830 + LU632_RS03885 0.86 -0.7 777,830 + LU632_RS03885 0.86 -0.2 777,830 + LU632_RS03885 0.86 +0.1 777,830 + LU632_RS03885 0.86 +0.9 777,831 - LU632_RS03885 0.86 -0.0 777,831 - LU632_RS03885 0.86 -0.3 777,831 - LU632_RS03885 0.86 -0.7 777,831 - LU632_RS03885 0.86 -0.4 777,831 - LU632_RS03885 0.86 +0.6 777,831 - LU632_RS03885 0.86 -0.0 777,831 - LU632_RS03885 0.86 -0.1 777,831 - LU632_RS03885 0.86 -0.1 777,831 - LU632_RS03885 0.86 +0.0 777,899 - +0.7 777,982 + -0.4 778,055 + +0.1 778,056 - -1.4 778,056 - +0.0 778,080 + +1.9 778,127 + +0.7 778,127 + -1.0 778,128 - -1.1 778,146 + -1.2 778,146 + +0.4 778,149 - +0.4 778,149 - +1.3 778,277 + +0.9 778,278 - +1.9 778,278 - -1.5 778,289 + -0.2 778,353 - -0.1 778,409 + -0.3 778,409 + -1.1 778,409 + +1.3 778,410 - +0.3 778,413 - +0.7 778,413 - +0.1 778,552 + -0.1 778,567 + +0.4 778,568 - +0.3 778,568 - +0.1 778,782 - LU632_RS03890 0.85 -0.5 779,099 - -1.0 779,185 - +0.1 779,185 - +0.7 779,425 - +0.3 779,446 + +0.3 779,455 + +1.8 779,492 + +0.6 779,492 + +1.3 779,492 + -0.2 779,493 - +0.0 779,685 + LU632_RS03895 0.27 -0.9 779,688 - LU632_RS03895 0.27 +0.1 779,715 + LU632_RS03895 0.30 +1.3 779,717 + LU632_RS03895 0.31 +1.1
Or see this region's nucleotide sequence