Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03560 and LU632_RS03565 are separated by 165 nucleotides LU632_RS03565 and LU632_RS03570 are separated by 75 nucleotides
LU632_RS03560: LU632_RS03560 - terminase ATPase subunit family protein, at 719,842 to 721,611
_RS03560
LU632_RS03565: LU632_RS03565 - GPO family capsid scaffolding protein, at 721,777 to 722,631
_RS03565
LU632_RS03570: LU632_RS03570 - phage major capsid protein, P2 family, at 722,707 to 723,774
_RS03570
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 720.847 kb on + strand, within LU632_RS03560 at 720.860 kb on + strand, within LU632_RS03560 at 720.860 kb on + strand, within LU632_RS03560 at 720.861 kb on - strand, within LU632_RS03560 at 720.993 kb on - strand, within LU632_RS03560 at 721.008 kb on - strand, within LU632_RS03560 at 721.021 kb on - strand, within LU632_RS03560 at 721.088 kb on + strand, within LU632_RS03560 at 721.132 kb on - strand, within LU632_RS03560 at 721.248 kb on + strand, within LU632_RS03560 at 721.594 kb on - strand at 721.649 kb on + strand at 721.649 kb on + strand at 721.843 kb on - strand at 721.879 kb on + strand, within LU632_RS03565 at 721.880 kb on - strand, within LU632_RS03565 at 722.137 kb on + strand, within LU632_RS03565 at 722.138 kb on - strand, within LU632_RS03565 at 722.188 kb on + strand, within LU632_RS03565 at 722.703 kb on + strand at 722.703 kb on + strand at 722.704 kb on - strand at 722.704 kb on - strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.706 kb on + strand at 722.707 kb on - strand at 722.707 kb on - strand at 722.707 kb on - strand at 722.733 kb on + strand at 722.741 kb on - strand at 723.007 kb on + strand, within LU632_RS03570 at 723.008 kb on - strand, within LU632_RS03570 at 723.025 kb on - strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.041 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.046 kb on + strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.047 kb on - strand, within LU632_RS03570 at 723.048 kb on + strand, within LU632_RS03570 at 723.230 kb on - strand, within LU632_RS03570 at 723.382 kb on + strand, within LU632_RS03570 at 723.421 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.440 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.545 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570 at 723.592 kb on - strand, within LU632_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 720,847 + LU632_RS03560 0.57 -1.4 720,860 + LU632_RS03560 0.58 -1.2 720,860 + LU632_RS03560 0.58 -0.4 720,861 - LU632_RS03560 0.58 -0.2 720,993 - LU632_RS03560 0.65 -0.4 721,008 - LU632_RS03560 0.66 -0.6 721,021 - LU632_RS03560 0.67 +0.4 721,088 + LU632_RS03560 0.70 +0.4 721,132 - LU632_RS03560 0.73 +0.5 721,248 + LU632_RS03560 0.79 -0.8 721,594 - +1.1 721,649 + +0.6 721,649 + -0.3 721,843 - -0.8 721,879 + LU632_RS03565 0.12 +2.0 721,880 - LU632_RS03565 0.12 +2.1 722,137 + LU632_RS03565 0.42 +0.3 722,138 - LU632_RS03565 0.42 -0.1 722,188 + LU632_RS03565 0.48 +0.8 722,703 + -0.2 722,703 + +0.1 722,704 - -1.2 722,704 - +0.1 722,706 + +0.2 722,706 + -0.9 722,706 + -0.9 722,706 + +0.2 722,707 - +0.8 722,707 - -0.4 722,707 - -1.3 722,733 + -0.3 722,741 - +1.2 723,007 + LU632_RS03570 0.28 -2.4 723,008 - LU632_RS03570 0.28 -0.2 723,025 - LU632_RS03570 0.30 +0.0 723,041 + LU632_RS03570 0.31 +0.1 723,041 + LU632_RS03570 0.31 -1.7 723,046 + LU632_RS03570 0.32 -1.8 723,046 + LU632_RS03570 0.32 +0.1 723,046 + LU632_RS03570 0.32 +0.9 723,047 - LU632_RS03570 0.32 -0.5 723,047 - LU632_RS03570 0.32 -1.7 723,047 - LU632_RS03570 0.32 +0.1 723,048 + LU632_RS03570 0.32 -0.9 723,230 - LU632_RS03570 0.49 -0.1 723,382 + LU632_RS03570 0.63 +0.7 723,421 - LU632_RS03570 0.67 -0.6 723,440 - LU632_RS03570 0.69 +0.7 723,440 - LU632_RS03570 0.69 +1.1 723,440 - LU632_RS03570 0.69 +0.4 723,545 - LU632_RS03570 0.78 +1.3 723,545 - LU632_RS03570 0.78 +0.6 723,592 - LU632_RS03570 0.83 -0.2 723,592 - LU632_RS03570 0.83 -1.1
Or see this region's nucleotide sequence