Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiB and sgrR are separated by 174 nucleotides sgrR and LU632_RS02845 are separated by 261 nucleotides
LU632_RS02835: thiB - thiamine ABC transporter substrate binding subunit, at 576,918 to 577,904
thiB
LU632_RS02840: sgrR - HTH-type transcriptional regulator SgrR, at 578,079 to 579,740
sgrR
LU632_RS02845: LU632_RS02845 - MFS transporter, at 580,002 to 581,180
_RS02845
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 577.176 kb on + strand, within thiB at 577.177 kb on - strand, within thiB at 577.177 kb on - strand, within thiB at 577.201 kb on - strand, within thiB at 577.241 kb on - strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.256 kb on + strand, within thiB at 577.257 kb on - strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.258 kb on + strand, within thiB at 577.259 kb on - strand, within thiB at 577.300 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.511 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.516 kb on + strand, within thiB at 577.517 kb on - strand, within thiB at 577.537 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.741 kb on + strand, within thiB at 577.822 kb on + strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.823 kb on - strand at 577.829 kb on - strand at 578.047 kb on - strand at 578.051 kb on + strand at 578.052 kb on - strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.156 kb on + strand at 578.157 kb on - strand at 578.157 kb on - strand at 578.160 kb on + strand at 578.161 kb on - strand at 578.161 kb on - strand at 578.175 kb on + strand at 578.176 kb on - strand at 578.225 kb on + strand at 578.416 kb on + strand, within sgrR at 578.693 kb on + strand, within sgrR at 578.693 kb on + strand, within sgrR at 578.731 kb on + strand, within sgrR at 578.732 kb on - strand, within sgrR at 578.804 kb on - strand, within sgrR at 578.876 kb on - strand, within sgrR at 578.967 kb on + strand, within sgrR at 579.049 kb on + strand, within sgrR at 579.049 kb on + strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.087 kb on - strand, within sgrR at 579.101 kb on - strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.365 kb on - strand, within sgrR at 579.624 kb on - strand at 579.785 kb on + strand at 579.785 kb on + strand at 579.786 kb on - strand at 579.786 kb on - strand at 579.849 kb on + strand at 579.897 kb on + strand at 579.958 kb on + strand at 579.967 kb on + strand at 579.967 kb on + strand at 580.056 kb on - strand at 580.071 kb on - strand at 580.167 kb on - strand, within LU632_RS02845 at 580.361 kb on + strand, within LU632_RS02845 at 580.362 kb on - strand, within LU632_RS02845 at 580.436 kb on + strand, within LU632_RS02845 at 580.437 kb on - strand, within LU632_RS02845 at 580.504 kb on - strand, within LU632_RS02845 at 580.661 kb on - strand, within LU632_RS02845 at 580.692 kb on - strand, within LU632_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 577,176 + thiB LU632_RS02835 0.26 -2.1 577,177 - thiB LU632_RS02835 0.26 -0.6 577,177 - thiB LU632_RS02835 0.26 -0.4 577,201 - thiB LU632_RS02835 0.29 +0.1 577,241 - thiB LU632_RS02835 0.33 +2.4 577,256 + thiB LU632_RS02835 0.34 -0.3 577,256 + thiB LU632_RS02835 0.34 -1.0 577,256 + thiB LU632_RS02835 0.34 -1.1 577,257 - thiB LU632_RS02835 0.34 +0.2 577,258 + thiB LU632_RS02835 0.34 -1.0 577,258 + thiB LU632_RS02835 0.34 +0.4 577,258 + thiB LU632_RS02835 0.34 -0.6 577,258 + thiB LU632_RS02835 0.34 +0.6 577,259 - thiB LU632_RS02835 0.35 -0.1 577,300 + thiB LU632_RS02835 0.39 -0.6 577,511 + thiB LU632_RS02835 0.60 +0.1 577,511 + thiB LU632_RS02835 0.60 -0.1 577,511 + thiB LU632_RS02835 0.60 -0.7 577,516 + thiB LU632_RS02835 0.61 +0.6 577,516 + thiB LU632_RS02835 0.61 -0.8 577,516 + thiB LU632_RS02835 0.61 +1.2 577,517 - thiB LU632_RS02835 0.61 -1.2 577,537 + thiB LU632_RS02835 0.63 +0.3 577,741 + thiB LU632_RS02835 0.83 +0.4 577,741 + thiB LU632_RS02835 0.83 +1.4 577,822 + +0.7 577,823 - -0.4 577,823 - +3.0 577,823 - -1.2 577,823 - -1.6 577,823 - -0.6 577,829 - +0.2 578,047 - -0.0 578,051 + +0.6 578,052 - -0.6 578,156 + +0.4 578,156 + +0.7 578,156 + +0.6 578,156 + -1.1 578,157 - -0.3 578,157 - +1.5 578,160 + +0.4 578,161 - -0.6 578,161 - -1.6 578,175 + +0.8 578,176 - +1.6 578,225 + -0.6 578,416 + sgrR LU632_RS02840 0.20 -0.8 578,693 + sgrR LU632_RS02840 0.37 +1.4 578,693 + sgrR LU632_RS02840 0.37 -0.2 578,731 + sgrR LU632_RS02840 0.39 -0.0 578,732 - sgrR LU632_RS02840 0.39 -0.4 578,804 - sgrR LU632_RS02840 0.44 -1.7 578,876 - sgrR LU632_RS02840 0.48 -1.4 578,967 + sgrR LU632_RS02840 0.53 +0.4 579,049 + sgrR LU632_RS02840 0.58 +1.8 579,049 + sgrR LU632_RS02840 0.58 +0.3 579,050 - sgrR LU632_RS02840 0.58 +0.7 579,050 - sgrR LU632_RS02840 0.58 +1.4 579,054 - sgrR LU632_RS02840 0.59 -0.4 579,054 - sgrR LU632_RS02840 0.59 +0.4 579,087 - sgrR LU632_RS02840 0.61 -0.3 579,101 - sgrR LU632_RS02840 0.61 -0.7 579,269 + sgrR LU632_RS02840 0.72 +0.3 579,269 + sgrR LU632_RS02840 0.72 +0.3 579,365 - sgrR LU632_RS02840 0.77 -1.0 579,624 - -0.5 579,785 + +1.0 579,785 + -0.3 579,786 - -0.5 579,786 - -0.2 579,849 + -0.0 579,897 + +0.5 579,958 + -1.6 579,967 + -1.1 579,967 + -1.2 580,056 - -1.9 580,071 - -0.7 580,167 - LU632_RS02845 0.14 +0.3 580,361 + LU632_RS02845 0.30 -0.9 580,362 - LU632_RS02845 0.31 -0.2 580,436 + LU632_RS02845 0.37 +1.0 580,437 - LU632_RS02845 0.37 -1.6 580,504 - LU632_RS02845 0.43 +1.4 580,661 - LU632_RS02845 0.56 +0.9 580,692 - LU632_RS02845 0.59 +1.4
Or see this region's nucleotide sequence