Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02110

Experiment: plant=Melon; plant sample=MP3; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02105 and LU632_RS02110 overlap by 4 nucleotidesLU632_RS02110 and LU632_RS02115 are separated by 2 nucleotidesLU632_RS02115 and ppa are separated by 304 nucleotides LU632_RS02105: LU632_RS02105 - autotransporter assembly complex protein TamA, at 413,725 to 415,449 _RS02105 LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213 _RS02110 LU632_RS02115: LU632_RS02115 - gamma-glutamylcyclotransferase, at 419,216 to 419,569 _RS02115 LU632_RS02120: ppa - inorganic diphosphatase, at 419,874 to 420,404 ppa Position (kb) 415 416 417 418 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.514 kb on - strand, within LU632_RS02105at 414.530 kb on + strand, within LU632_RS02105at 414.530 kb on + strand, within LU632_RS02105at 414.530 kb on + strand, within LU632_RS02105at 414.536 kb on - strand, within LU632_RS02105at 414.591 kb on + strand, within LU632_RS02105at 414.595 kb on + strand, within LU632_RS02105at 414.658 kb on + strand, within LU632_RS02105at 414.661 kb on - strand, within LU632_RS02105at 414.694 kb on + strand, within LU632_RS02105at 414.694 kb on + strand, within LU632_RS02105at 414.695 kb on - strand, within LU632_RS02105at 414.695 kb on - strand, within LU632_RS02105at 414.697 kb on + strand, within LU632_RS02105at 414.698 kb on - strand, within LU632_RS02105at 414.698 kb on - strand, within LU632_RS02105at 414.698 kb on - strand, within LU632_RS02105at 414.738 kb on + strand, within LU632_RS02105at 415.159 kb on - strand, within LU632_RS02105at 415.231 kb on + strand, within LU632_RS02105at 415.232 kb on - strand, within LU632_RS02105at 415.237 kb on + strand, within LU632_RS02105at 415.238 kb on - strand, within LU632_RS02105at 415.238 kb on - strand, within LU632_RS02105at 415.239 kb on + strand, within LU632_RS02105at 415.239 kb on + strand, within LU632_RS02105at 415.239 kb on + strand, within LU632_RS02105at 415.413 kb on + strandat 415.415 kb on + strandat 415.415 kb on + strandat 415.415 kb on + strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.416 kb on - strandat 415.424 kb on - strandat 415.424 kb on - strandat 415.446 kb on - strandat 415.496 kb on - strandat 415.498 kb on + strandat 415.498 kb on + strandat 415.498 kb on + strandat 415.502 kb on + strandat 415.520 kb on - strandat 415.661 kb on + strandat 415.859 kb on + strand, within LU632_RS02110at 415.859 kb on + strand, within LU632_RS02110at 415.859 kb on + strand, within LU632_RS02110at 415.860 kb on - strand, within LU632_RS02110at 415.871 kb on + strand, within LU632_RS02110at 415.871 kb on + strand, within LU632_RS02110at 415.872 kb on - strand, within LU632_RS02110at 415.872 kb on - strand, within LU632_RS02110at 415.875 kb on - strand, within LU632_RS02110at 416.027 kb on - strand, within LU632_RS02110at 416.143 kb on + strand, within LU632_RS02110at 416.171 kb on + strand, within LU632_RS02110at 416.172 kb on - strand, within LU632_RS02110at 416.172 kb on - strand, within LU632_RS02110at 416.172 kb on - strand, within LU632_RS02110at 416.199 kb on - strand, within LU632_RS02110at 416.209 kb on + strand, within LU632_RS02110at 416.209 kb on + strand, within LU632_RS02110at 416.210 kb on - strand, within LU632_RS02110at 416.237 kb on - strand, within LU632_RS02110at 416.312 kb on + strand, within LU632_RS02110at 416.340 kb on - strand, within LU632_RS02110at 416.673 kb on - strand, within LU632_RS02110at 416.763 kb on - strand, within LU632_RS02110at 416.783 kb on - strand, within LU632_RS02110at 416.795 kb on + strand, within LU632_RS02110at 416.799 kb on - strand, within LU632_RS02110at 416.799 kb on - strand, within LU632_RS02110at 416.799 kb on - strand, within LU632_RS02110at 416.802 kb on - strand, within LU632_RS02110at 416.960 kb on + strand, within LU632_RS02110at 416.967 kb on + strand, within LU632_RS02110at 416.968 kb on - strand, within LU632_RS02110at 416.969 kb on + strand, within LU632_RS02110at 417.017 kb on + strand, within LU632_RS02110at 417.018 kb on - strand, within LU632_RS02110at 417.369 kb on - strand, within LU632_RS02110at 417.449 kb on + strand, within LU632_RS02110at 417.450 kb on - strand, within LU632_RS02110at 417.452 kb on + strand, within LU632_RS02110at 417.452 kb on + strand, within LU632_RS02110at 417.510 kb on + strand, within LU632_RS02110at 417.578 kb on + strand, within LU632_RS02110at 417.579 kb on - strand, within LU632_RS02110at 417.652 kb on + strand, within LU632_RS02110at 417.652 kb on + strand, within LU632_RS02110at 417.652 kb on + strand, within LU632_RS02110at 417.653 kb on - strand, within LU632_RS02110at 417.653 kb on - strand, within LU632_RS02110at 417.749 kb on + strand, within LU632_RS02110at 417.866 kb on + strand, within LU632_RS02110at 417.875 kb on + strand, within LU632_RS02110at 417.879 kb on - strand, within LU632_RS02110at 417.881 kb on + strand, within LU632_RS02110at 418.075 kb on + strand, within LU632_RS02110at 418.076 kb on - strand, within LU632_RS02110at 418.076 kb on - strand, within LU632_RS02110at 418.290 kb on - strand, within LU632_RS02110at 418.456 kb on + strand, within LU632_RS02110at 418.457 kb on - strand, within LU632_RS02110at 418.457 kb on - strand, within LU632_RS02110at 418.511 kb on + strand, within LU632_RS02110at 418.518 kb on - strand, within LU632_RS02110at 418.518 kb on - strand, within LU632_RS02110at 418.544 kb on + strand, within LU632_RS02110at 418.591 kb on + strand, within LU632_RS02110at 418.778 kb on + strand, within LU632_RS02110at 418.822 kb on + strand, within LU632_RS02110at 418.823 kb on - strand, within LU632_RS02110at 418.869 kb on + strandat 418.869 kb on + strandat 418.869 kb on + strandat 418.870 kb on - strandat 418.922 kb on - strandat 418.922 kb on - strandat 419.001 kb on - strandat 419.001 kb on - strandat 419.080 kb on + strandat 419.080 kb on + strandat 419.144 kb on + strandat 419.149 kb on + strandat 419.150 kb on - strandat 419.151 kb on + strandat 419.322 kb on - strand, within LU632_RS02115at 419.635 kb on + strandat 419.641 kb on + strandat 419.642 kb on - strandat 419.680 kb on + strandat 419.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA
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414,514 - LU632_RS02105 0.46 -1.2
414,530 + LU632_RS02105 0.47 -0.0
414,530 + LU632_RS02105 0.47 -1.1
414,530 + LU632_RS02105 0.47 +0.4
414,536 - LU632_RS02105 0.47 +0.3
414,591 + LU632_RS02105 0.50 -0.9
414,595 + LU632_RS02105 0.50 -1.2
414,658 + LU632_RS02105 0.54 +0.6
414,661 - LU632_RS02105 0.54 +0.6
414,694 + LU632_RS02105 0.56 -0.8
414,694 + LU632_RS02105 0.56 +0.3
414,695 - LU632_RS02105 0.56 +0.2
414,695 - LU632_RS02105 0.56 -0.6
414,697 + LU632_RS02105 0.56 +0.2
414,698 - LU632_RS02105 0.56 -0.5
414,698 - LU632_RS02105 0.56 +0.2
414,698 - LU632_RS02105 0.56 -0.9
414,738 + LU632_RS02105 0.59 +0.1
415,159 - LU632_RS02105 0.83 +0.2
415,231 + LU632_RS02105 0.87 -0.2
415,232 - LU632_RS02105 0.87 +0.6
415,237 + LU632_RS02105 0.88 -0.2
415,238 - LU632_RS02105 0.88 -0.6
415,238 - LU632_RS02105 0.88 +0.6
415,239 + LU632_RS02105 0.88 -0.4
415,239 + LU632_RS02105 0.88 +0.0
415,239 + LU632_RS02105 0.88 +1.2
415,413 + +0.0
415,415 + -1.6
415,415 + +0.6
415,415 + -0.0
415,416 - -1.4
415,416 - -0.4
415,416 - -0.3
415,416 - -0.8
415,416 - +1.4
415,416 - +0.2
415,416 - -0.2
415,424 - +0.2
415,424 - -0.5
415,446 - -0.1
415,496 - +1.0
415,498 + +0.6
415,498 + -0.2
415,498 + +0.5
415,502 + -0.8
415,520 - -0.1
415,661 + -0.1
415,859 + LU632_RS02110 0.11 +0.2
415,859 + LU632_RS02110 0.11 +0.3
415,859 + LU632_RS02110 0.11 +0.2
415,860 - LU632_RS02110 0.11 +0.1
415,871 + LU632_RS02110 0.11 -1.9
415,871 + LU632_RS02110 0.11 +0.4
415,872 - LU632_RS02110 0.11 +0.2
415,872 - LU632_RS02110 0.11 -1.0
415,875 - LU632_RS02110 0.11 -0.8
416,027 - LU632_RS02110 0.15 -0.8
416,143 + LU632_RS02110 0.18 -0.5
416,171 + LU632_RS02110 0.19 -2.0
416,172 - LU632_RS02110 0.19 +0.6
416,172 - LU632_RS02110 0.19 -1.2
416,172 - LU632_RS02110 0.19 +1.0
416,199 - LU632_RS02110 0.20 +0.6
416,209 + LU632_RS02110 0.20 -0.4
416,209 + LU632_RS02110 0.20 -2.5
416,210 - LU632_RS02110 0.20 +0.0
416,237 - LU632_RS02110 0.21 -0.2
416,312 + LU632_RS02110 0.23 +0.0
416,340 - LU632_RS02110 0.24 +0.0
416,673 - LU632_RS02110 0.33 +0.2
416,763 - LU632_RS02110 0.35 +0.2
416,783 - LU632_RS02110 0.35 +0.3
416,795 + LU632_RS02110 0.36 -1.4
416,799 - LU632_RS02110 0.36 -0.5
416,799 - LU632_RS02110 0.36 -1.8
416,799 - LU632_RS02110 0.36 +1.4
416,802 - LU632_RS02110 0.36 -0.2
416,960 + LU632_RS02110 0.40 -1.2
416,967 + LU632_RS02110 0.40 -0.8
416,968 - LU632_RS02110 0.40 +0.4
416,969 + LU632_RS02110 0.40 -3.2
417,017 + LU632_RS02110 0.42 -0.5
417,018 - LU632_RS02110 0.42 +0.8
417,369 - LU632_RS02110 0.51 +0.4
417,449 + LU632_RS02110 0.53 +0.7
417,450 - LU632_RS02110 0.53 +1.2
417,452 + LU632_RS02110 0.53 +0.9
417,452 + LU632_RS02110 0.53 -2.0
417,510 + LU632_RS02110 0.55 +0.4
417,578 + LU632_RS02110 0.57 +0.3
417,579 - LU632_RS02110 0.57 -1.0
417,652 + LU632_RS02110 0.59 +0.8
417,652 + LU632_RS02110 0.59 -1.4
417,652 + LU632_RS02110 0.59 +0.3
417,653 - LU632_RS02110 0.59 +1.4
417,653 - LU632_RS02110 0.59 -0.2
417,749 + LU632_RS02110 0.61 +1.4
417,866 + LU632_RS02110 0.64 -0.5
417,875 + LU632_RS02110 0.64 -0.4
417,879 - LU632_RS02110 0.65 -0.9
417,881 + LU632_RS02110 0.65 -0.2
418,075 + LU632_RS02110 0.70 -0.6
418,076 - LU632_RS02110 0.70 +0.1
418,076 - LU632_RS02110 0.70 -0.8
418,290 - LU632_RS02110 0.75 +1.4
418,456 + LU632_RS02110 0.80 -0.1
418,457 - LU632_RS02110 0.80 +2.0
418,457 - LU632_RS02110 0.80 +1.1
418,511 + LU632_RS02110 0.81 -0.2
418,518 - LU632_RS02110 0.82 +0.6
418,518 - LU632_RS02110 0.82 -1.0
418,544 + LU632_RS02110 0.82 -0.9
418,591 + LU632_RS02110 0.83 +0.3
418,778 + LU632_RS02110 0.88 -0.3
418,822 + LU632_RS02110 0.90 +0.5
418,823 - LU632_RS02110 0.90 +0.1
418,869 + +0.1
418,869 + +0.1
418,869 + +0.2
418,870 - +0.3
418,922 - +0.4
418,922 - -1.8
419,001 - +0.4
419,001 - +1.0
419,080 + +0.8
419,080 + -0.2
419,144 + -1.3
419,149 + +0.8
419,150 - +0.7
419,151 + -0.9
419,322 - LU632_RS02115 0.30 +1.4
419,635 + +0.3
419,641 + +0.2
419,642 - -0.8
419,680 + -1.4
419,802 - +1.3

Or see this region's nucleotide sequence