Experiment: plant=Melon; plant sample=MP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssC and LU632_RS00720 are separated by 151 nucleotides LU632_RS00720 and tssJ are separated by 130 nucleotides tssJ and tssK are separated by 3 nucleotides
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
LU632_RS00720: LU632_RS00720 - Hcp family type VI secretion system effector, at 152,437 to 152,922
_RS00720
LU632_RS00725: tssJ - type VI secretion system lipoprotein TssJ, at 153,053 to 153,601
tssJ
LU632_RS00730: tssK - type VI secretion system baseplate subunit TssK, at 153,605 to 154,951
tssK
Position (kb) 152
153 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 151.459 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.556 kb on + strand, within tssC at 151.575 kb on - strand, within tssC at 151.607 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.615 kb on - strand, within tssC at 151.615 kb on - strand, within tssC at 151.730 kb on - strand, within tssC at 151.740 kb on - strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.963 kb on - strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 152.003 kb on + strand, within tssC at 152.031 kb on - strand, within tssC at 152.079 kb on + strand, within tssC at 152.079 kb on + strand, within tssC at 152.080 kb on - strand, within tssC at 152.084 kb on - strand, within tssC at 152.165 kb on - strand at 152.165 kb on - strand at 152.165 kb on - strand at 152.184 kb on + strand at 152.184 kb on + strand at 152.243 kb on - strand at 152.246 kb on + strand at 152.247 kb on - strand at 152.278 kb on + strand at 152.344 kb on + strand at 152.344 kb on + strand at 152.345 kb on - strand at 152.412 kb on - strand at 152.448 kb on + strand at 152.554 kb on - strand, within LU632_RS00720 at 152.605 kb on - strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.651 kb on - strand, within LU632_RS00720 at 152.671 kb on - strand, within LU632_RS00720 at 152.893 kb on + strand at 153.106 kb on - strand at 153.224 kb on - strand, within tssJ at 153.249 kb on + strand, within tssJ at 153.250 kb on - strand, within tssJ at 153.319 kb on + strand, within tssJ at 153.322 kb on + strand, within tssJ at 153.617 kb on - strand at 153.678 kb on - strand at 153.744 kb on - strand, within tssK at 153.750 kb on + strand, within tssK at 153.866 kb on - strand, within tssK at 153.882 kb on + strand, within tssK at 153.882 kb on + strand, within tssK
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP3; plant location=NA remove 151,459 - tssC LU632_RS00715 0.45 +1.5 151,548 - tssC LU632_RS00715 0.51 -0.2 151,548 - tssC LU632_RS00715 0.51 +0.2 151,556 + tssC LU632_RS00715 0.51 -1.2 151,575 - tssC LU632_RS00715 0.53 -1.1 151,607 + tssC LU632_RS00715 0.55 +0.7 151,614 + tssC LU632_RS00715 0.55 -0.1 151,614 + tssC LU632_RS00715 0.55 -0.7 151,615 - tssC LU632_RS00715 0.55 -1.2 151,615 - tssC LU632_RS00715 0.55 +0.1 151,730 - tssC LU632_RS00715 0.63 -0.3 151,740 - tssC LU632_RS00715 0.64 +0.2 151,962 + tssC LU632_RS00715 0.78 +1.5 151,962 + tssC LU632_RS00715 0.78 -0.9 151,962 + tssC LU632_RS00715 0.78 -0.5 151,963 - tssC LU632_RS00715 0.78 -0.4 151,964 + tssC LU632_RS00715 0.79 -1.5 151,964 + tssC LU632_RS00715 0.79 +0.6 151,964 + tssC LU632_RS00715 0.79 +0.7 151,964 + tssC LU632_RS00715 0.79 +0.0 151,965 - tssC LU632_RS00715 0.79 -0.7 151,965 - tssC LU632_RS00715 0.79 -0.2 151,965 - tssC LU632_RS00715 0.79 +0.4 152,003 + tssC LU632_RS00715 0.81 +0.3 152,031 - tssC LU632_RS00715 0.83 -0.5 152,079 + tssC LU632_RS00715 0.86 +0.4 152,079 + tssC LU632_RS00715 0.86 +0.7 152,080 - tssC LU632_RS00715 0.86 -1.0 152,084 - tssC LU632_RS00715 0.87 -1.9 152,165 - -0.7 152,165 - +0.9 152,165 - +0.1 152,184 + -0.9 152,184 + -0.5 152,243 - +0.5 152,246 + -0.3 152,247 - +0.5 152,278 + -0.0 152,344 + -0.5 152,344 + -1.1 152,345 - +3.5 152,412 - +0.4 152,448 + +0.6 152,554 - LU632_RS00720 0.24 +0.4 152,605 - LU632_RS00720 0.35 -1.1 152,645 + LU632_RS00720 0.43 +0.4 152,645 + LU632_RS00720 0.43 +3.1 152,651 - LU632_RS00720 0.44 -0.9 152,671 - LU632_RS00720 0.48 +1.0 152,893 + +0.1 153,106 - +0.1 153,224 - tssJ LU632_RS00725 0.31 +1.6 153,249 + tssJ LU632_RS00725 0.36 +0.6 153,250 - tssJ LU632_RS00725 0.36 -0.6 153,319 + tssJ LU632_RS00725 0.48 +0.5 153,322 + tssJ LU632_RS00725 0.49 +0.8 153,617 - -0.0 153,678 - -0.1 153,744 - tssK LU632_RS00730 0.10 -0.3 153,750 + tssK LU632_RS00730 0.11 +2.6 153,866 - tssK LU632_RS00730 0.19 +0.6 153,882 + tssK LU632_RS00730 0.21 -0.1 153,882 + tssK LU632_RS00730 0.21 +0.5
Or see this region's nucleotide sequence