Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26145

Experiment: plant=Melon; plant sample=MP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS26130 and LU632_RS26135 are separated by 67 nucleotidesLU632_RS26135 and LU632_RS26140 are separated by 60 nucleotidesLU632_RS26140 and LU632_RS26145 are separated by 102 nucleotidesLU632_RS26145 and LU632_RS26150 are separated by 335 nucleotidesLU632_RS26150 and LU632_RS26155 are separated by 212 nucleotides LU632_RS26130: LU632_RS26130 - hypothetical protein, at 28,435 to 28,794 _RS26130 LU632_RS26135: LU632_RS26135 - hypothetical protein, at 28,862 to 29,215 _RS26135 LU632_RS26140: LU632_RS26140 - hypothetical protein, at 29,276 to 29,512 _RS26140 LU632_RS26145: LU632_RS26145 - hypothetical protein, at 29,615 to 29,866 _RS26145 LU632_RS26150: LU632_RS26150 - replication/maintenance protein RepL, at 30,202 to 30,627 _RS26150 LU632_RS26155: LU632_RS26155 - hypothetical protein, at 30,840 to 31,172 _RS26155 Position (kb) 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 28.652 kb on - strand, within LU632_RS26130at 28.674 kb on + strand, within LU632_RS26130at 28.675 kb on - strand, within LU632_RS26130at 28.684 kb on + strand, within LU632_RS26130at 28.685 kb on - strand, within LU632_RS26130at 28.786 kb on + strandat 28.786 kb on + strandat 28.786 kb on + strandat 28.786 kb on + strandat 28.787 kb on - strandat 28.787 kb on - strandat 28.813 kb on + strandat 28.871 kb on + strandat 28.871 kb on + strandat 28.872 kb on - strandat 28.872 kb on - strandat 28.872 kb on - strandat 28.956 kb on - strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.034 kb on + strand, within LU632_RS26135at 29.077 kb on + strand, within LU632_RS26135at 29.078 kb on - strand, within LU632_RS26135at 29.078 kb on - strand, within LU632_RS26135at 29.080 kb on + strand, within LU632_RS26135at 29.081 kb on - strand, within LU632_RS26135at 29.125 kb on + strand, within LU632_RS26135at 29.126 kb on - strand, within LU632_RS26135at 29.126 kb on - strand, within LU632_RS26135at 29.126 kb on - strand, within LU632_RS26135at 29.215 kb on + strandat 29.216 kb on - strandat 29.216 kb on - strandat 29.288 kb on - strandat 29.401 kb on - strand, within LU632_RS26140at 29.401 kb on - strand, within LU632_RS26140at 29.497 kb on - strandat 29.529 kb on + strandat 29.555 kb on + strandat 29.613 kb on + strandat 29.614 kb on - strandat 29.641 kb on + strand, within LU632_RS26145at 29.641 kb on + strand, within LU632_RS26145at 29.641 kb on + strand, within LU632_RS26145at 29.642 kb on - strand, within LU632_RS26145at 29.656 kb on + strand, within LU632_RS26145at 29.662 kb on + strand, within LU632_RS26145at 29.666 kb on + strand, within LU632_RS26145at 29.666 kb on + strand, within LU632_RS26145at 29.666 kb on + strand, within LU632_RS26145at 29.666 kb on + strand, within LU632_RS26145at 29.667 kb on - strand, within LU632_RS26145at 29.667 kb on - strand, within LU632_RS26145at 29.667 kb on - strand, within LU632_RS26145at 29.667 kb on - strand, within LU632_RS26145at 29.667 kb on - strand, within LU632_RS26145at 29.671 kb on + strand, within LU632_RS26145at 29.672 kb on - strand, within LU632_RS26145at 29.680 kb on - strand, within LU632_RS26145at 29.759 kb on - strand, within LU632_RS26145at 29.786 kb on + strand, within LU632_RS26145at 29.787 kb on - strand, within LU632_RS26145at 29.826 kb on - strand, within LU632_RS26145at 29.870 kb on - strandat 29.870 kb on - strandat 29.870 kb on - strandat 29.899 kb on - strandat 29.924 kb on + strandat 29.925 kb on - strandat 29.974 kb on - strandat 29.993 kb on + strandat 30.002 kb on - strandat 30.631 kb on + strandat 30.690 kb on + strandat 30.690 kb on + strandat 30.691 kb on - strandat 30.696 kb on + strandat 30.696 kb on + strandat 30.696 kb on + strandat 30.697 kb on - strandat 30.697 kb on - strandat 30.702 kb on + strandat 30.702 kb on + strandat 30.702 kb on + strandat 30.703 kb on - strandat 30.703 kb on - strandat 30.703 kb on - strandat 30.714 kb on + strandat 30.715 kb on - strandat 30.721 kb on - strandat 30.721 kb on - strandat 30.734 kb on + strandat 30.735 kb on - strandat 30.776 kb on + strandat 30.777 kb on - strandat 30.777 kb on - strandat 30.777 kb on - strandat 30.778 kb on + strandat 30.778 kb on + strandat 30.779 kb on - strandat 30.779 kb on - strandat 30.779 kb on - strandat 30.779 kb on - strandat 30.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA
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28,652 - LU632_RS26130 0.60 -0.1
28,674 + LU632_RS26130 0.66 +0.1
28,675 - LU632_RS26130 0.67 -1.8
28,684 + LU632_RS26130 0.69 -1.4
28,685 - LU632_RS26130 0.69 -1.0
28,786 + +0.1
28,786 + +0.9
28,786 + -1.0
28,786 + -1.8
28,787 - +0.0
28,787 - +2.4
28,813 + +0.0
28,871 + -1.6
28,871 + -2.1
28,872 - -2.1
28,872 - -0.4
28,872 - -1.2
28,956 - LU632_RS26135 0.27 +0.1
29,034 + LU632_RS26135 0.49 +1.3
29,034 + LU632_RS26135 0.49 +2.4
29,034 + LU632_RS26135 0.49 -0.3
29,034 + LU632_RS26135 0.49 -0.2
29,077 + LU632_RS26135 0.61 +0.7
29,078 - LU632_RS26135 0.61 -3.8
29,078 - LU632_RS26135 0.61 +0.0
29,080 + LU632_RS26135 0.62 -1.4
29,081 - LU632_RS26135 0.62 -0.2
29,125 + LU632_RS26135 0.74 +3.2
29,126 - LU632_RS26135 0.75 +0.9
29,126 - LU632_RS26135 0.75 -0.8
29,126 - LU632_RS26135 0.75 +0.9
29,215 + +2.9
29,216 - -0.8
29,216 - -3.9
29,288 - -2.6
29,401 - LU632_RS26140 0.53 -0.8
29,401 - LU632_RS26140 0.53 -0.4
29,497 - -0.8
29,529 + -1.2
29,555 + +1.1
29,613 + -1.4
29,614 - +0.0
29,641 + LU632_RS26145 0.10 +1.1
29,641 + LU632_RS26145 0.10 -0.7
29,641 + LU632_RS26145 0.10 -0.2
29,642 - LU632_RS26145 0.11 +2.2
29,656 + LU632_RS26145 0.16 -2.4
29,662 + LU632_RS26145 0.19 +2.6
29,666 + LU632_RS26145 0.20 +1.4
29,666 + LU632_RS26145 0.20 +1.9
29,666 + LU632_RS26145 0.20 -2.4
29,666 + LU632_RS26145 0.20 +1.8
29,667 - LU632_RS26145 0.21 +1.3
29,667 - LU632_RS26145 0.21 -0.6
29,667 - LU632_RS26145 0.21 +1.1
29,667 - LU632_RS26145 0.21 -0.6
29,667 - LU632_RS26145 0.21 -0.2
29,671 + LU632_RS26145 0.22 +1.0
29,672 - LU632_RS26145 0.23 -3.1
29,680 - LU632_RS26145 0.26 -0.0
29,759 - LU632_RS26145 0.57 -0.1
29,786 + LU632_RS26145 0.68 +1.4
29,787 - LU632_RS26145 0.68 -0.4
29,826 - LU632_RS26145 0.84 -0.0
29,870 - +0.3
29,870 - -0.4
29,870 - +0.5
29,899 - -0.5
29,924 + -1.7
29,925 - -1.3
29,974 - -0.5
29,993 + +1.8
30,002 - -2.6
30,631 + +2.1
30,690 + +2.0
30,690 + -1.2
30,691 - +0.2
30,696 + -1.8
30,696 + -0.6
30,696 + +0.9
30,697 - -0.4
30,697 - -0.1
30,702 + -3.5
30,702 + +0.5
30,702 + -2.3
30,703 - -0.1
30,703 - -0.8
30,703 - -1.1
30,714 + -0.9
30,715 - +0.4
30,721 - +0.3
30,721 - +0.7
30,734 + -1.0
30,735 - -0.5
30,776 + +0.2
30,777 - +1.0
30,777 - -0.8
30,777 - -2.1
30,778 + -3.1
30,778 + -0.8
30,779 - +3.5
30,779 - -1.6
30,779 - -1.8
30,779 - +0.1
30,779 - +0.5

Or see this region's nucleotide sequence