Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26015

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
11,848	+				-0.1
11,848	+				-0.1
11,848	+				+0.9
11,848	+				-0.1
11,849	-				+1.1
11,849	-				-1.0
11,849	-				+0.1
11,849	-				+1.2
11,849	-				-0.1
11,852	+				-0.5
11,852	+				-1.4
11,852	+				-1.2
11,852	+				+1.6
11,852	+				+0.4
11,853	-				-1.8
11,853	-				-0.3
11,853	-				+1.2
11,853	-				-0.3
11,853	-				-3.5
11,853	-				+0.5
11,853	-				-0.5
11,853	-				+1.8
11,882	-				+0.3
11,900	+				+0.1
11,900	+				+0.1
11,904	+				-2.1
11,905	-				-3.3
11,934	+		LU632_RS26005	0.15	-0.3
11,937	+		LU632_RS26005	0.16	-0.2
11,938	-		LU632_RS26005	0.16	+2.9
11,964	+		LU632_RS26005	0.20	-1.0
11,965	-		LU632_RS26005	0.21	-0.0
12,013	-		LU632_RS26005	0.29	-0.8
12,037	-		LU632_RS26005	0.34	-1.9
12,099	-		LU632_RS26005	0.45	-0.9
12,099	-		LU632_RS26005	0.45	-1.8
12,171	+		LU632_RS26005	0.58	-3.4
12,195	+		LU632_RS26005	0.62	+0.1
12,274	+		LU632_RS26005	0.77	-0.4
12,377	+				-2.8
12,377	+				-3.5
12,434	-				-1.4
12,434	-				-1.4
12,461	+		LU632_RS26010	0.15	-0.9
12,461	+		LU632_RS26010	0.15	+0.6
12,461	+		LU632_RS26010	0.15	+0.2
12,462	-		LU632_RS26010	0.15	-0.6
12,462	-		LU632_RS26010	0.15	+0.8
12,466	+		LU632_RS26010	0.16	+0.2
12,466	+		LU632_RS26010	0.16	+0.8
12,467	-		LU632_RS26010	0.17	-2.8
12,488	+		LU632_RS26010	0.22	-1.0
12,488	+		LU632_RS26010	0.22	-2.1
12,489	-		LU632_RS26010	0.23	-0.7
12,490	+		LU632_RS26010	0.23	-1.0
12,516	-		LU632_RS26010	0.30	+0.9
12,533	+		LU632_RS26010	0.34	-0.6
12,533	+		LU632_RS26010	0.34	-1.8
12,534	-		LU632_RS26010	0.35	-0.1
12,651	+		LU632_RS26010	0.66	-0.8
12,665	+		LU632_RS26010	0.70	+0.2
12,665	+		LU632_RS26010	0.70	-1.4
12,665	+		LU632_RS26010	0.70	-1.0
12,665	+		LU632_RS26010	0.70	-1.4
12,666	-		LU632_RS26010	0.70	+0.9
12,666	-		LU632_RS26010	0.70	+0.5
12,666	-		LU632_RS26010	0.70	-0.5
12,666	-		LU632_RS26010	0.70	-0.8
12,666	-		LU632_RS26010	0.70	-3.0
12,666	-		LU632_RS26010	0.70	-1.8
12,666	-		LU632_RS26010	0.70	-2.2
12,708	+		LU632_RS26010	0.81	-1.0
12,708	+		LU632_RS26010	0.81	-3.1
12,795	+				-1.4
12,795	+				-1.1
12,796	-				+1.2
12,796	-				-0.2
12,796	-				-2.2
12,796	-				+0.9
12,796	-				+0.1
12,796	-				-0.5
12,796	-				-1.0
12,796	-				-2.1
12,796	-				-1.0
12,813	+				-1.2
13,043	+		LU632_RS26015	0.50	-1.3
13,043	+		LU632_RS26015	0.50	-2.4
13,162	+		LU632_RS26015	0.73	-2.4
13,162	+		LU632_RS26015	0.73	-2.1
13,162	+		LU632_RS26015	0.73	-1.8
13,162	+		LU632_RS26015	0.73	-1.8
13,163	-		LU632_RS26015	0.73	+1.2
13,163	-		LU632_RS26015	0.73	-0.3
13,164	+		LU632_RS26015	0.73	-1.8
13,165	-		LU632_RS26015	0.73	-3.4
13,165	-		LU632_RS26015	0.73	-1.8
13,165	-		LU632_RS26015	0.73	+1.3
13,233	-		LU632_RS26015	0.86	-2.5
13,511	+		LU632_RS26020	0.54	+1.8
14,296	-				-0.5