Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25685 and LU632_RS25690 overlap by 4 nucleotides LU632_RS25690 and traJ overlap by 4 nucleotides
LU632_RS25685: LU632_RS25685 - DotD/TraH family lipoprotein, at 65,946 to 66,398
_RS25685
LU632_RS25690: LU632_RS25690 - type IV secretion system DotC family protein, at 66,395 to 67,183
_RS25690
LU632_RS25695: traJ - plasmid transfer ATPase TraJ, at 67,180 to 68,337
traJ
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 66.215 kb on + strand, within LU632_RS25685 at 66.225 kb on + strand, within LU632_RS25685 at 66.226 kb on - strand, within LU632_RS25685 at 66.313 kb on + strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.361 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.426 kb on + strand at 66.427 kb on - strand at 66.472 kb on + strand at 66.472 kb on + strand at 66.473 kb on - strand at 66.473 kb on - strand at 66.506 kb on + strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.677 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.787 kb on + strand, within LU632_RS25690 at 67.014 kb on + strand, within LU632_RS25690 at 67.111 kb on + strand at 67.112 kb on - strand at 67.147 kb on + strand at 67.189 kb on - strand at 67.220 kb on + strand at 67.221 kb on - strand at 67.221 kb on - strand at 67.221 kb on - strand at 67.287 kb on - strand at 67.326 kb on + strand, within traJ at 67.461 kb on + strand, within traJ at 67.461 kb on + strand, within traJ at 67.461 kb on + strand, within traJ at 67.462 kb on - strand, within traJ at 67.462 kb on - strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.465 kb on + strand, within traJ at 67.466 kb on - strand, within traJ at 67.466 kb on - strand, within traJ at 67.466 kb on - strand, within traJ at 67.466 kb on - strand, within traJ at 67.512 kb on + strand, within traJ at 67.705 kb on - strand, within traJ at 67.708 kb on + strand, within traJ at 67.708 kb on + strand, within traJ at 67.709 kb on - strand, within traJ at 67.709 kb on - strand, within traJ at 67.714 kb on + strand, within traJ at 67.715 kb on - strand, within traJ at 67.715 kb on - strand, within traJ at 67.715 kb on - strand, within traJ at 67.745 kb on + strand, within traJ at 67.765 kb on - strand, within traJ at 67.767 kb on - strand, within traJ at 67.995 kb on + strand, within traJ at 67.996 kb on - strand, within traJ at 68.071 kb on + strand, within traJ at 68.071 kb on + strand, within traJ at 68.071 kb on + strand, within traJ at 68.072 kb on - strand, within traJ at 68.072 kb on - strand, within traJ at 68.131 kb on + strand, within traJ at 68.132 kb on - strand, within traJ at 68.138 kb on + strand, within traJ at 68.254 kb on - strand at 68.254 kb on - strand at 68.254 kb on - strand at 68.257 kb on + strand at 68.257 kb on + strand at 68.257 kb on + strand at 68.257 kb on + strand at 68.257 kb on + strand at 68.258 kb on - strand at 68.271 kb on + strand at 68.272 kb on - strand at 68.272 kb on - strand at 68.272 kb on - strand at 68.272 kb on - strand at 68.272 kb on - strand at 68.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 66,215 + LU632_RS25685 0.59 -2.8 66,225 + LU632_RS25685 0.62 +2.0 66,226 - LU632_RS25685 0.62 +2.0 66,313 + LU632_RS25685 0.81 +0.1 66,314 - LU632_RS25685 0.81 +0.4 66,314 - LU632_RS25685 0.81 +1.4 66,314 - LU632_RS25685 0.81 +0.2 66,314 - LU632_RS25685 0.81 +1.1 66,361 - +0.7 66,409 - -0.5 66,409 - +0.5 66,409 - +0.9 66,409 - -2.0 66,426 + -0.0 66,427 - +1.8 66,472 + -0.3 66,472 + +0.4 66,473 - -3.4 66,473 - -3.0 66,506 + LU632_RS25690 0.14 -0.6 66,507 - LU632_RS25690 0.14 -0.8 66,507 - LU632_RS25690 0.14 -1.4 66,645 - LU632_RS25690 0.32 -0.5 66,645 - LU632_RS25690 0.32 -0.6 66,645 - LU632_RS25690 0.32 -1.0 66,677 + LU632_RS25690 0.36 -0.1 66,755 + LU632_RS25690 0.46 +0.3 66,755 + LU632_RS25690 0.46 -0.1 66,755 + LU632_RS25690 0.46 -1.2 66,755 + LU632_RS25690 0.46 -0.2 66,755 + LU632_RS25690 0.46 +1.7 66,755 + LU632_RS25690 0.46 -0.3 66,756 - LU632_RS25690 0.46 -0.8 66,756 - LU632_RS25690 0.46 -2.9 66,756 - LU632_RS25690 0.46 +0.3 66,756 - LU632_RS25690 0.46 +0.5 66,756 - LU632_RS25690 0.46 +1.1 66,756 - LU632_RS25690 0.46 -0.6 66,757 + LU632_RS25690 0.46 +0.2 66,757 + LU632_RS25690 0.46 -3.0 66,757 + LU632_RS25690 0.46 +2.2 66,757 + LU632_RS25690 0.46 +0.8 66,757 + LU632_RS25690 0.46 +0.1 66,757 + LU632_RS25690 0.46 +0.3 66,757 + LU632_RS25690 0.46 -2.0 66,757 + LU632_RS25690 0.46 +0.4 66,758 - LU632_RS25690 0.46 +0.3 66,758 - LU632_RS25690 0.46 -0.3 66,758 - LU632_RS25690 0.46 -3.2 66,758 - LU632_RS25690 0.46 +1.7 66,758 - LU632_RS25690 0.46 +2.6 66,760 + LU632_RS25690 0.46 -0.5 66,760 + LU632_RS25690 0.46 -1.0 66,760 + LU632_RS25690 0.46 +0.3 66,760 + LU632_RS25690 0.46 -0.7 66,760 + LU632_RS25690 0.46 +0.4 66,760 + LU632_RS25690 0.46 +1.6 66,760 + LU632_RS25690 0.46 -0.4 66,761 - LU632_RS25690 0.46 +0.4 66,761 - LU632_RS25690 0.46 +0.1 66,761 - LU632_RS25690 0.46 +0.9 66,761 - LU632_RS25690 0.46 +0.6 66,761 - LU632_RS25690 0.46 -1.8 66,761 - LU632_RS25690 0.46 -0.5 66,761 - LU632_RS25690 0.46 -1.5 66,761 - LU632_RS25690 0.46 -0.7 66,761 - LU632_RS25690 0.46 -0.0 66,761 - LU632_RS25690 0.46 +0.8 66,761 - LU632_RS25690 0.46 -0.1 66,761 - LU632_RS25690 0.46 +2.0 66,761 - LU632_RS25690 0.46 +0.1 66,761 - LU632_RS25690 0.46 -2.2 66,762 + LU632_RS25690 0.47 -1.8 66,762 + LU632_RS25690 0.47 -0.2 66,762 + LU632_RS25690 0.47 -0.5 66,763 - LU632_RS25690 0.47 +0.7 66,763 - LU632_RS25690 0.47 -2.6 66,763 - LU632_RS25690 0.47 -0.2 66,763 - LU632_RS25690 0.47 +1.6 66,787 + LU632_RS25690 0.50 +0.8 67,014 + LU632_RS25690 0.78 +0.0 67,111 + -1.8 67,112 - -1.1 67,147 + +0.5 67,189 - -0.6 67,220 + +0.9 67,221 - -0.5 67,221 - +1.4 67,221 - -0.8 67,287 - +2.2 67,326 + traJ LU632_RS25695 0.13 +1.1 67,461 + traJ LU632_RS25695 0.24 -1.6 67,461 + traJ LU632_RS25695 0.24 +1.8 67,461 + traJ LU632_RS25695 0.24 -0.2 67,462 - traJ LU632_RS25695 0.24 -1.2 67,462 - traJ LU632_RS25695 0.24 +0.0 67,465 + traJ LU632_RS25695 0.25 +0.0 67,465 + traJ LU632_RS25695 0.25 -0.0 67,465 + traJ LU632_RS25695 0.25 +2.1 67,465 + traJ LU632_RS25695 0.25 -0.7 67,465 + traJ LU632_RS25695 0.25 -2.0 67,466 - traJ LU632_RS25695 0.25 +0.9 67,466 - traJ LU632_RS25695 0.25 +1.5 67,466 - traJ LU632_RS25695 0.25 +1.0 67,466 - traJ LU632_RS25695 0.25 +0.3 67,512 + traJ LU632_RS25695 0.29 -0.3 67,705 - traJ LU632_RS25695 0.45 +0.4 67,708 + traJ LU632_RS25695 0.46 -1.8 67,708 + traJ LU632_RS25695 0.46 -0.2 67,709 - traJ LU632_RS25695 0.46 -0.0 67,709 - traJ LU632_RS25695 0.46 -0.5 67,714 + traJ LU632_RS25695 0.46 -1.6 67,715 - traJ LU632_RS25695 0.46 -0.5 67,715 - traJ LU632_RS25695 0.46 -0.1 67,715 - traJ LU632_RS25695 0.46 -1.6 67,745 + traJ LU632_RS25695 0.49 +1.8 67,765 - traJ LU632_RS25695 0.51 -1.2 67,767 - traJ LU632_RS25695 0.51 -0.1 67,995 + traJ LU632_RS25695 0.70 +0.3 67,996 - traJ LU632_RS25695 0.70 +0.6 68,071 + traJ LU632_RS25695 0.77 -0.2 68,071 + traJ LU632_RS25695 0.77 -1.2 68,071 + traJ LU632_RS25695 0.77 -0.6 68,072 - traJ LU632_RS25695 0.77 -1.7 68,072 - traJ LU632_RS25695 0.77 +0.5 68,131 + traJ LU632_RS25695 0.82 -0.8 68,132 - traJ LU632_RS25695 0.82 +0.3 68,138 + traJ LU632_RS25695 0.83 -0.7 68,254 - +0.5 68,254 - -0.8 68,254 - -2.8 68,257 + +2.8 68,257 + +0.2 68,257 + -1.8 68,257 + -0.2 68,257 + -0.4 68,258 - -0.8 68,271 + -0.4 68,272 - -1.2 68,272 - +1.0 68,272 - +0.3 68,272 - -2.0 68,272 - +0.8 68,272 - -2.7
Or see this region's nucleotide sequence