Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25490 and LU632_RS25495 are separated by 417 nucleotides LU632_RS25495 and LU632_RS25500 overlap by 8 nucleotides LU632_RS25500 and LU632_RS25505 are separated by 252 nucleotides LU632_RS25505 and LU632_RS25510 are separated by 148 nucleotides
LU632_RS25490: LU632_RS25490 - antirestriction protein, at 30,946 to 31,524
_RS25490
LU632_RS25495: LU632_RS25495 - type II toxin-antitoxin system MqsA family antitoxin, at 31,942 to 32,256
_RS25495
LU632_RS25500: LU632_RS25500 - toxin, at 32,249 to 32,593
_RS25500
LU632_RS25505: LU632_RS25505 - methyltransferase, at 32,846 to 33,148
_RS25505
LU632_RS25510: LU632_RS25510 - transposase, at 33,297 to 33,560
_RS25510
Position (kb) 32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 31.295 kb on + strand, within LU632_RS25490 at 31.295 kb on + strand, within LU632_RS25490 at 31.295 kb on + strand, within LU632_RS25490 at 31.296 kb on - strand, within LU632_RS25490 at 31.354 kb on + strand, within LU632_RS25490 at 31.834 kb on + strand at 31.835 kb on - strand at 31.910 kb on - strand at 31.934 kb on + strand at 31.935 kb on - strand at 31.935 kb on - strand at 32.101 kb on - strand, within LU632_RS25495 at 32.344 kb on - strand, within LU632_RS25500 at 32.348 kb on - strand, within LU632_RS25500 at 32.348 kb on - strand, within LU632_RS25500 at 32.388 kb on + strand, within LU632_RS25500 at 32.389 kb on - strand, within LU632_RS25500 at 32.389 kb on - strand, within LU632_RS25500 at 32.420 kb on - strand, within LU632_RS25500 at 32.444 kb on + strand, within LU632_RS25500 at 32.522 kb on - strand, within LU632_RS25500 at 32.553 kb on + strand, within LU632_RS25500 at 32.554 kb on - strand, within LU632_RS25500 at 32.576 kb on + strand at 32.579 kb on - strand at 32.579 kb on - strand at 32.579 kb on - strand at 32.579 kb on - strand at 32.583 kb on - strand at 32.590 kb on - strand at 32.590 kb on - strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.679 kb on + strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.680 kb on - strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.741 kb on + strand at 32.742 kb on - strand at 32.742 kb on - strand at 32.742 kb on - strand at 32.742 kb on - strand at 32.859 kb on + strand at 32.928 kb on + strand, within LU632_RS25505 at 32.929 kb on + strand, within LU632_RS25505 at 32.929 kb on - strand, within LU632_RS25505 at 32.962 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.096 kb on + strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.097 kb on - strand, within LU632_RS25505 at 33.149 kb on + strand at 33.150 kb on - strand at 33.347 kb on + strand, within LU632_RS25510 at 33.364 kb on + strand, within LU632_RS25510 at 33.364 kb on + strand, within LU632_RS25510 at 33.364 kb on + strand, within LU632_RS25510 at 33.364 kb on + strand, within LU632_RS25510 at 33.364 kb on + strand, within LU632_RS25510 at 33.365 kb on - strand, within LU632_RS25510 at 33.365 kb on - strand, within LU632_RS25510 at 33.365 kb on - strand, within LU632_RS25510 at 33.391 kb on + strand, within LU632_RS25510 at 33.474 kb on + strand, within LU632_RS25510 at 33.482 kb on + strand, within LU632_RS25510 at 33.482 kb on + strand, within LU632_RS25510 at 33.482 kb on + strand, within LU632_RS25510 at 33.482 kb on + strand, within LU632_RS25510 at 33.483 kb on - strand, within LU632_RS25510 at 33.483 kb on - strand, within LU632_RS25510
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 31,295 + LU632_RS25490 0.60 -1.6 31,295 + LU632_RS25490 0.60 -1.8 31,295 + LU632_RS25490 0.60 -1.0 31,296 - LU632_RS25490 0.60 -0.4 31,354 + LU632_RS25490 0.70 +1.2 31,834 + +0.4 31,835 - -0.8 31,910 - +0.2 31,934 + -1.1 31,935 - +2.2 31,935 - -1.0 32,101 - LU632_RS25495 0.50 -0.5 32,344 - LU632_RS25500 0.28 +7.0 32,348 - LU632_RS25500 0.29 -0.3 32,348 - LU632_RS25500 0.29 -1.0 32,388 + LU632_RS25500 0.40 -1.2 32,389 - LU632_RS25500 0.41 +0.3 32,389 - LU632_RS25500 0.41 +0.9 32,420 - LU632_RS25500 0.50 -0.6 32,444 + LU632_RS25500 0.57 +1.0 32,522 - LU632_RS25500 0.79 +0.1 32,553 + LU632_RS25500 0.88 +1.6 32,554 - LU632_RS25500 0.88 -0.6 32,576 + +0.3 32,579 - +0.2 32,579 - +0.3 32,579 - -2.1 32,579 - -0.4 32,583 - -0.8 32,590 - -1.2 32,590 - -1.3 32,679 + +0.4 32,679 + -0.7 32,679 + -1.3 32,679 + +1.4 32,679 + -0.9 32,679 + +0.7 32,679 + -1.3 32,679 + -0.2 32,679 + +1.3 32,679 + -0.5 32,679 + +0.9 32,680 - -1.8 32,680 - +0.2 32,680 - +0.4 32,680 - -0.7 32,680 - +1.7 32,680 - +0.8 32,680 - +1.5 32,680 - -2.2 32,680 - -0.7 32,741 + +0.6 32,741 + +0.6 32,741 + -0.4 32,741 + +0.0 32,741 + -0.3 32,741 + -0.8 32,741 + -1.6 32,741 + -0.7 32,742 - -0.7 32,742 - -0.6 32,742 - +3.0 32,742 - +0.9 32,859 + +2.3 32,928 + LU632_RS25505 0.27 +0.6 32,929 + LU632_RS25505 0.27 +1.3 32,929 - LU632_RS25505 0.27 +0.8 32,962 + LU632_RS25505 0.38 +0.0 33,096 + LU632_RS25505 0.83 +0.2 33,096 + LU632_RS25505 0.83 +1.8 33,096 + LU632_RS25505 0.83 +0.5 33,096 + LU632_RS25505 0.83 +0.1 33,096 + LU632_RS25505 0.83 +0.3 33,096 + LU632_RS25505 0.83 -0.1 33,096 + LU632_RS25505 0.83 -2.8 33,096 + LU632_RS25505 0.83 +3.9 33,097 - LU632_RS25505 0.83 +0.1 33,097 - LU632_RS25505 0.83 +1.2 33,097 - LU632_RS25505 0.83 -1.6 33,097 - LU632_RS25505 0.83 -0.0 33,097 - LU632_RS25505 0.83 -0.0 33,097 - LU632_RS25505 0.83 -3.0 33,097 - LU632_RS25505 0.83 -0.5 33,149 + -1.6 33,150 - +1.1 33,347 + LU632_RS25510 0.19 -0.5 33,364 + LU632_RS25510 0.25 -0.1 33,364 + LU632_RS25510 0.25 +0.2 33,364 + LU632_RS25510 0.25 -1.2 33,364 + LU632_RS25510 0.25 +0.3 33,364 + LU632_RS25510 0.25 -2.0 33,365 - LU632_RS25510 0.26 +0.3 33,365 - LU632_RS25510 0.26 +2.4 33,365 - LU632_RS25510 0.26 -1.6 33,391 + LU632_RS25510 0.36 +0.1 33,474 + LU632_RS25510 0.67 -0.3 33,482 + LU632_RS25510 0.70 -1.8 33,482 + LU632_RS25510 0.70 -2.6 33,482 + LU632_RS25510 0.70 -2.8 33,482 + LU632_RS25510 0.70 -1.2 33,483 - LU632_RS25510 0.70 +0.4 33,483 - LU632_RS25510 0.70 -0.7
Or see this region's nucleotide sequence