Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25430 and LU632_RS25435 overlap by 32 nucleotides LU632_RS25435 and LU632_RS25440 are separated by 323 nucleotides LU632_RS25440 and LU632_RS25445 are separated by 14 nucleotides
LU632_RS25430: LU632_RS25430 - conjugal transfer protein TrbC, at 20,585 to 22,915
_RS25430
LU632_RS25435: LU632_RS25435 - phospholipase D family protein, at 22,884 to 23,357
_RS25435
LU632_RS25440: LU632_RS25440 - hypothetical protein, at 23,681 to 24,205
_RS25440
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 22.686 kb on + strand at 22.686 kb on + strand at 22.686 kb on + strand at 22.687 kb on - strand at 22.687 kb on - strand at 22.687 kb on - strand at 22.817 kb on + strand at 22.817 kb on + strand at 22.817 kb on + strand at 22.819 kb on + strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.820 kb on - strand at 22.835 kb on + strand at 22.835 kb on + strand at 22.835 kb on + strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.836 kb on - strand at 22.873 kb on + strand at 22.918 kb on + strand at 22.979 kb on + strand, within LU632_RS25435 at 22.979 kb on + strand, within LU632_RS25435 at 22.979 kb on + strand, within LU632_RS25435 at 22.979 kb on + strand, within LU632_RS25435 at 22.980 kb on - strand, within LU632_RS25435 at 22.980 kb on - strand, within LU632_RS25435 at 22.980 kb on - strand, within LU632_RS25435 at 23.013 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.015 kb on + strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.016 kb on - strand, within LU632_RS25435 at 23.125 kb on + strand, within LU632_RS25435 at 23.142 kb on - strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.314 kb on - strand at 23.328 kb on - strand at 23.335 kb on + strand at 23.336 kb on - strand at 23.355 kb on + strand at 23.407 kb on + strand at 23.412 kb on + strand at 23.412 kb on + strand at 23.413 kb on - strand at 23.442 kb on + strand at 23.443 kb on - strand at 23.599 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.693 kb on - strand at 23.693 kb on - strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.709 kb on - strand at 23.833 kb on + strand, within LU632_RS25440 at 23.863 kb on + strand, within LU632_RS25440 at 23.902 kb on - strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.040 kb on - strand, within LU632_RS25440 at 24.110 kb on - strand, within LU632_RS25440 at 24.160 kb on + strand at 24.161 kb on - strand at 24.198 kb on - strand at 24.208 kb on - strand at 24.261 kb on + strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.265 kb on - strand at 24.265 kb on - strand at 24.311 kb on + strand at 24.386 kb on + strand at 24.397 kb on - strand at 24.414 kb on + strand, within LU632_RS25445 at 24.516 kb on + strand, within LU632_RS25445 at 24.517 kb on - strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.547 kb on - strand, within LU632_RS25445 at 24.560 kb on + strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.648 kb on + strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.919 kb on - strand, within LU632_RS25445 at 24.930 kb on + strand, within LU632_RS25445 at 24.931 kb on - strand, within LU632_RS25445 at 24.932 kb on - strand, within LU632_RS25445 at 25.010 kb on + strand, within LU632_RS25445 at 25.011 kb on - strand, within LU632_RS25445 at 25.020 kb on - strand, within LU632_RS25445 at 25.060 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.188 kb on + strand, within LU632_RS25445
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 22,686 + +0.7 22,686 + +1.0 22,686 + -0.1 22,687 - +0.7 22,687 - +1.1 22,687 - -0.2 22,817 + -0.0 22,817 + +1.2 22,817 + +0.4 22,819 + -0.3 22,820 - +2.2 22,820 - +1.6 22,820 - -2.6 22,820 - +0.1 22,820 - -2.2 22,820 - -0.1 22,835 + -0.7 22,835 + -1.0 22,835 + +0.9 22,836 - +0.3 22,836 - -0.1 22,836 - -1.6 22,836 - -1.1 22,873 + -1.2 22,918 + +1.8 22,979 + LU632_RS25435 0.20 +0.1 22,979 + LU632_RS25435 0.20 +1.3 22,979 + LU632_RS25435 0.20 -1.1 22,979 + LU632_RS25435 0.20 +0.1 22,980 - LU632_RS25435 0.20 -0.6 22,980 - LU632_RS25435 0.20 -0.1 22,980 - LU632_RS25435 0.20 -1.2 23,013 + LU632_RS25435 0.27 +1.3 23,015 + LU632_RS25435 0.28 +0.1 23,015 + LU632_RS25435 0.28 -0.2 23,015 + LU632_RS25435 0.28 +0.6 23,015 + LU632_RS25435 0.28 +3.6 23,015 + LU632_RS25435 0.28 +0.0 23,016 - LU632_RS25435 0.28 -1.6 23,016 - LU632_RS25435 0.28 +0.1 23,016 - LU632_RS25435 0.28 -0.4 23,016 - LU632_RS25435 0.28 -1.6 23,125 + LU632_RS25435 0.51 +0.5 23,142 - LU632_RS25435 0.54 +0.8 23,238 + LU632_RS25435 0.75 +1.0 23,238 + LU632_RS25435 0.75 -1.8 23,238 + LU632_RS25435 0.75 -0.2 23,238 + LU632_RS25435 0.75 +0.0 23,238 + LU632_RS25435 0.75 -1.2 23,314 - +0.2 23,328 - -1.2 23,335 + -0.5 23,336 - -0.2 23,355 + -2.1 23,407 + -1.2 23,412 + +0.2 23,412 + +0.5 23,413 - +1.8 23,442 + +0.8 23,443 - +1.3 23,599 + +0.1 23,692 + +0.1 23,692 + -0.4 23,692 + +0.9 23,692 + -0.6 23,693 - +0.1 23,693 - -1.3 23,698 + +2.7 23,698 + -0.6 23,698 + -0.5 23,698 + -0.8 23,698 + +0.5 23,698 + -2.2 23,698 + +2.9 23,698 + -0.9 23,699 - +0.9 23,699 - -0.4 23,699 - -0.4 23,699 - +0.9 23,699 - +1.6 23,709 - -0.5 23,833 + LU632_RS25440 0.29 +0.6 23,863 + LU632_RS25440 0.35 -0.4 23,902 - LU632_RS25440 0.42 -1.6 24,031 + LU632_RS25440 0.67 -1.0 24,031 + LU632_RS25440 0.67 -1.6 24,031 + LU632_RS25440 0.67 -1.1 24,031 + LU632_RS25440 0.67 -0.3 24,031 + LU632_RS25440 0.67 -0.1 24,031 + LU632_RS25440 0.67 -0.4 24,031 + LU632_RS25440 0.67 +1.1 24,031 + LU632_RS25440 0.67 -0.5 24,031 + LU632_RS25440 0.67 -1.8 24,031 + LU632_RS25440 0.67 +3.3 24,031 + LU632_RS25440 0.67 +1.9 24,031 + LU632_RS25440 0.67 -1.6 24,031 + LU632_RS25440 0.67 -1.5 24,031 + LU632_RS25440 0.67 +0.1 24,032 - LU632_RS25440 0.67 +1.6 24,032 - LU632_RS25440 0.67 +0.5 24,032 - LU632_RS25440 0.67 +0.1 24,032 - LU632_RS25440 0.67 +0.1 24,032 - LU632_RS25440 0.67 -1.8 24,032 - LU632_RS25440 0.67 +0.6 24,032 - LU632_RS25440 0.67 +2.2 24,032 - LU632_RS25440 0.67 +0.3 24,032 - LU632_RS25440 0.67 -1.8 24,032 - LU632_RS25440 0.67 -0.1 24,032 - LU632_RS25440 0.67 -1.6 24,032 - LU632_RS25440 0.67 +0.6 24,032 - LU632_RS25440 0.67 -1.2 24,032 - LU632_RS25440 0.67 -0.2 24,040 - LU632_RS25440 0.68 -0.5 24,110 - LU632_RS25440 0.82 -1.8 24,160 + -1.6 24,161 - +0.8 24,198 - -0.7 24,208 - -0.8 24,261 + -0.8 24,262 - +1.3 24,262 - -1.2 24,264 + -1.6 24,264 + +0.9 24,264 + +4.0 24,265 - -0.2 24,265 - -0.5 24,311 + -0.4 24,386 + -1.6 24,397 - -0.0 24,414 + LU632_RS25445 0.10 -2.0 24,516 + LU632_RS25445 0.15 -1.2 24,517 - LU632_RS25445 0.15 -0.6 24,518 + LU632_RS25445 0.15 +0.8 24,518 + LU632_RS25445 0.15 +1.4 24,518 + LU632_RS25445 0.15 -0.9 24,518 + LU632_RS25445 0.15 -3.5 24,518 + LU632_RS25445 0.15 +6.5 24,518 + LU632_RS25445 0.15 -0.1 24,518 + LU632_RS25445 0.15 +0.6 24,519 - LU632_RS25445 0.15 +2.0 24,519 - LU632_RS25445 0.15 -0.2 24,547 - LU632_RS25445 0.17 +1.7 24,560 + LU632_RS25445 0.18 -0.4 24,561 - LU632_RS25445 0.18 -1.0 24,561 - LU632_RS25445 0.18 -0.7 24,561 - LU632_RS25445 0.18 +0.3 24,645 + LU632_RS25445 0.22 -0.2 24,645 + LU632_RS25445 0.22 +2.1 24,646 - LU632_RS25445 0.22 -0.6 24,646 - LU632_RS25445 0.22 +1.1 24,648 + LU632_RS25445 0.22 -1.2 24,649 - LU632_RS25445 0.22 -1.2 24,649 - LU632_RS25445 0.22 -0.2 24,918 + LU632_RS25445 0.36 -0.2 24,918 + LU632_RS25445 0.36 +1.2 24,919 - LU632_RS25445 0.36 +0.1 24,930 + LU632_RS25445 0.37 -0.8 24,931 - LU632_RS25445 0.37 +1.9 24,932 - LU632_RS25445 0.37 -0.1 25,010 + LU632_RS25445 0.41 +0.2 25,011 - LU632_RS25445 0.41 +0.5 25,020 - LU632_RS25445 0.41 -0.2 25,060 - LU632_RS25445 0.43 +0.9 25,141 - LU632_RS25445 0.48 -1.3 25,141 - LU632_RS25445 0.48 -0.8 25,188 + LU632_RS25445 0.50 -2.6
Or see this region's nucleotide sequence