Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25020 and LU632_RS25025 overlap by 4 nucleotides LU632_RS25025 and LU632_RS25030 overlap by 1 nucleotides LU632_RS25030 and LU632_RS25035 overlap by 4 nucleotides LU632_RS25035 and LU632_RS25040 overlap by 11 nucleotides LU632_RS25040 and LU632_RS25045 are separated by 40 nucleotides
LU632_RS25020: LU632_RS25020 - hypothetical protein, at 4,770,047 to 4,770,295
_RS25020
LU632_RS25025: LU632_RS25025 - hypothetical protein, at 4,770,292 to 4,771,098
_RS25025
LU632_RS25030: LU632_RS25030 - hypothetical protein, at 4,771,098 to 4,771,310
_RS25030
LU632_RS25035: LU632_RS25035 - hypothetical protein, at 4,771,307 to 4,771,753
_RS25035
LU632_RS25040: LU632_RS25040 - regulatory protein GemA, at 4,771,743 to 4,772,240
_RS25040
LU632_RS25045: LU632_RS25045 - hypothetical protein, at 4,772,281 to 4,772,715
_RS25045
Position (kb) 4771
4772 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4770.098 kb on + strand, within LU632_RS25020 at 4770.315 kb on + strand at 4770.316 kb on - strand at 4770.348 kb on + strand at 4770.348 kb on + strand at 4770.349 kb on - strand at 4770.349 kb on - strand at 4770.453 kb on + strand, within LU632_RS25025 at 4770.553 kb on + strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.554 kb on - strand, within LU632_RS25025 at 4770.559 kb on - strand, within LU632_RS25025 at 4770.688 kb on + strand, within LU632_RS25025 at 4770.688 kb on + strand, within LU632_RS25025 at 4770.689 kb on - strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.840 kb on + strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.841 kb on - strand, within LU632_RS25025 at 4770.855 kb on + strand, within LU632_RS25025 at 4770.926 kb on + strand, within LU632_RS25025 at 4771.018 kb on + strand at 4771.018 kb on + strand at 4771.020 kb on + strand at 4771.064 kb on - strand at 4771.096 kb on + strand at 4771.096 kb on + strand at 4771.135 kb on + strand, within LU632_RS25030 at 4771.204 kb on - strand, within LU632_RS25030 at 4771.224 kb on - strand, within LU632_RS25030 at 4771.306 kb on + strand at 4771.306 kb on + strand at 4771.306 kb on + strand at 4771.306 kb on + strand at 4771.312 kb on + strand at 4771.312 kb on + strand at 4771.312 kb on + strand at 4771.313 kb on - strand at 4771.361 kb on + strand, within LU632_RS25035 at 4771.378 kb on + strand, within LU632_RS25035 at 4771.379 kb on - strand, within LU632_RS25035 at 4771.502 kb on + strand, within LU632_RS25035 at 4771.503 kb on - strand, within LU632_RS25035 at 4771.543 kb on + strand, within LU632_RS25035 at 4771.717 kb on - strand at 4771.752 kb on - strand at 4771.761 kb on - strand at 4771.810 kb on - strand, within LU632_RS25040 at 4771.859 kb on + strand, within LU632_RS25040 at 4771.859 kb on + strand, within LU632_RS25040 at 4771.859 kb on + strand, within LU632_RS25040 at 4771.860 kb on - strand, within LU632_RS25040 at 4771.975 kb on + strand, within LU632_RS25040 at 4772.038 kb on - strand, within LU632_RS25040 at 4772.038 kb on - strand, within LU632_RS25040 at 4772.052 kb on - strand, within LU632_RS25040 at 4772.063 kb on + strand, within LU632_RS25040 at 4772.092 kb on + strand, within LU632_RS25040 at 4772.196 kb on + strand at 4772.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 4,770,098 + LU632_RS25020 0.20 -0.3 4,770,315 + -0.4 4,770,316 - +0.5 4,770,348 + -0.6 4,770,348 + -0.4 4,770,349 - -2.1 4,770,349 - -2.1 4,770,453 + LU632_RS25025 0.20 +0.1 4,770,553 + LU632_RS25025 0.32 +1.2 4,770,554 - LU632_RS25025 0.32 -0.9 4,770,554 - LU632_RS25025 0.32 -0.8 4,770,554 - LU632_RS25025 0.32 +0.2 4,770,559 - LU632_RS25025 0.33 +0.4 4,770,688 + LU632_RS25025 0.49 +0.1 4,770,688 + LU632_RS25025 0.49 -0.3 4,770,689 - LU632_RS25025 0.49 -0.3 4,770,840 + LU632_RS25025 0.68 -0.7 4,770,840 + LU632_RS25025 0.68 +1.2 4,770,840 + LU632_RS25025 0.68 +0.4 4,770,840 + LU632_RS25025 0.68 -0.2 4,770,840 + LU632_RS25025 0.68 +0.4 4,770,840 + LU632_RS25025 0.68 -0.2 4,770,840 + LU632_RS25025 0.68 -0.8 4,770,841 - LU632_RS25025 0.68 -0.2 4,770,841 - LU632_RS25025 0.68 +0.5 4,770,841 - LU632_RS25025 0.68 +0.5 4,770,841 - LU632_RS25025 0.68 -0.1 4,770,841 - LU632_RS25025 0.68 -2.1 4,770,841 - LU632_RS25025 0.68 +0.5 4,770,841 - LU632_RS25025 0.68 +1.7 4,770,841 - LU632_RS25025 0.68 -0.3 4,770,841 - LU632_RS25025 0.68 +1.7 4,770,855 + LU632_RS25025 0.70 -1.1 4,770,926 + LU632_RS25025 0.79 +0.1 4,771,018 + +0.3 4,771,018 + +0.9 4,771,020 + +1.6 4,771,064 - +0.5 4,771,096 + -0.9 4,771,096 + -0.1 4,771,135 + LU632_RS25030 0.17 -1.3 4,771,204 - LU632_RS25030 0.50 -0.9 4,771,224 - LU632_RS25030 0.59 -0.9 4,771,306 + +0.8 4,771,306 + -0.0 4,771,306 + +0.2 4,771,306 + +0.1 4,771,312 + +0.6 4,771,312 + +1.3 4,771,312 + +3.3 4,771,313 - -0.5 4,771,361 + LU632_RS25035 0.12 -1.7 4,771,378 + LU632_RS25035 0.16 -1.3 4,771,379 - LU632_RS25035 0.16 +1.6 4,771,502 + LU632_RS25035 0.44 -2.3 4,771,503 - LU632_RS25035 0.44 -0.6 4,771,543 + LU632_RS25035 0.53 +0.1 4,771,717 - +0.4 4,771,752 - +0.5 4,771,761 - +2.3 4,771,810 - LU632_RS25040 0.13 +1.7 4,771,859 + LU632_RS25040 0.23 +1.2 4,771,859 + LU632_RS25040 0.23 +0.7 4,771,859 + LU632_RS25040 0.23 +0.1 4,771,860 - LU632_RS25040 0.23 +0.4 4,771,975 + LU632_RS25040 0.47 -2.1 4,772,038 - LU632_RS25040 0.59 +0.5 4,772,038 - LU632_RS25040 0.59 -2.0 4,772,052 - LU632_RS25040 0.62 +0.8 4,772,063 + LU632_RS25040 0.64 -0.7 4,772,092 + LU632_RS25040 0.70 +0.2 4,772,196 + +1.4 4,772,255 + +1.1
Or see this region's nucleotide sequence