Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24980

Experiment: plant=Melon; plant sample=MP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP2; plant location=NA
4,763,398	-				+0.3
4,763,407	+				-0.2
4,763,407	+				+3.2
4,763,408	-				+0.6
4,763,526	+				+1.4
4,763,527	-				+0.5
4,763,596	+				+3.2
4,763,597	-				+3.4
4,763,597	-				+1.5
4,763,609	-				+0.4
4,763,683	-				-0.0
4,763,704	-				+2.3
4,763,716	+				-0.3
4,763,717	-				-0.6
4,763,751	+		LU632_RS24975	0.10	-2.4
4,763,751	+		LU632_RS24975	0.10	-0.6
4,763,752	-		LU632_RS24975	0.11	+0.5
4,763,806	+		LU632_RS24975	0.20	+0.4
4,763,807	-		LU632_RS24975	0.20	+3.0
4,763,807	-		LU632_RS24975	0.20	+2.8
4,763,907	+		LU632_RS24975	0.37	-0.4
4,763,907	+		LU632_RS24975	0.37	-2.2
4,763,911	+		LU632_RS24975	0.37	-0.4
4,763,941	+		LU632_RS24975	0.42	+0.6
4,763,941	+		LU632_RS24975	0.42	-0.2
4,763,941	+		LU632_RS24975	0.42	-0.4
4,763,942	-		LU632_RS24975	0.42	+1.1
4,763,952	+		LU632_RS24975	0.44	-0.4
4,764,156	+		LU632_RS24975	0.78	+0.3
4,764,167	-		LU632_RS24975	0.80	-0.9
4,764,167	-		LU632_RS24975	0.80	+0.7
4,764,332	-				-1.4
4,764,380	-				-0.3
4,764,514	-		LU632_RS24980	0.50	-1.5
4,764,514	-		LU632_RS24980	0.50	-0.1
4,764,537	-		LU632_RS24980	0.59	-1.6
4,764,629	+				+1.7
4,764,630	-				+0.8
4,764,630	-				+1.7
4,764,641	-				+0.0
4,764,679	+				-0.3
4,764,680	-				-2.0
4,764,804	-				+1.5
4,764,804	-				+0.9
4,765,064	+		LU632_RS24985	0.22	+0.3
4,765,064	+		LU632_RS24985	0.22	+1.1
4,765,203	+		LU632_RS24985	0.29	-0.6
4,765,291	-		LU632_RS24985	0.33	-0.8
4,765,313	+		LU632_RS24985	0.34	-1.6
4,765,460	+		LU632_RS24985	0.42	+1.8
4,765,515	+		LU632_RS24985	0.44	+0.4
4,765,515	+		LU632_RS24985	0.44	+1.8
4,765,516	-		LU632_RS24985	0.44	+1.2
4,765,536	+		LU632_RS24985	0.45	-0.1
4,765,540	-		LU632_RS24985	0.46	+0.5
4,765,602	+		LU632_RS24985	0.49	+0.3
4,765,602	+		LU632_RS24985	0.49	-0.2
4,765,603	-		LU632_RS24985	0.49	-0.4
4,765,603	-		LU632_RS24985	0.49	-0.9
4,765,603	-		LU632_RS24985	0.49	-0.4
4,765,619	+		LU632_RS24985	0.50	+0.1
4,765,619	+		LU632_RS24985	0.50	-0.3
4,765,619	+		LU632_RS24985	0.50	-0.0
4,765,619	+		LU632_RS24985	0.50	-0.1
4,765,619	+		LU632_RS24985	0.50	-0.4
4,765,619	+		LU632_RS24985	0.50	-0.3
4,765,619	+		LU632_RS24985	0.50	+0.8
4,765,620	-		LU632_RS24985	0.50	+0.5
4,765,620	-		LU632_RS24985	0.50	+1.0
4,765,620	-		LU632_RS24985	0.50	-2.3